Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 397 / 3e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 377 / 3e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 290 / 1e-97 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 255 / 4e-84 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 82 / 4e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 77 / 1e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 76 / 3e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 69 / 3e-13 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G47510 64 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 59 / 9e-10 ATSFH12 SEC14-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026020 [exp] 607 / 0 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 386 / 3e-136 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 381 / 3e-134 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 362 / 1e-126 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 269 / 2e-88 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 266 / 6e-88 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 169 / 1e-51 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 103 / 7e-26 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 98 / 7e-24 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025800 [exp] 457 / 4e-164 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 454 / 5e-163 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 428 / 1e-152 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 395 / 2e-139 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 278 / 7e-93 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 280 / 9e-93 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G168100 [exp] 111 / 4e-29 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 91 / 2e-21 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 90 / 7e-21 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 88 / 3e-20 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10014312 pacid=23164661 polypeptide=Lus10014312 locus=Lus10014312.g ID=Lus10014312.BGIv1.0 annot-version=v1.0 ATGTTTCTGCGTAAGAAGCAGCAGAATGGTCAGGAGACTGATCTTGCCCAGCGAGATGTTAAGGTGAATGAGCTGAGGGCGGCTCTAGGACCATTATCAG GGAGGAGTTTGAAGTATTGCAGTGATGGATGCCTGCGGAGATACTTGGAAGCTAGGAACTGGAATGTTGACAAGGCTAGAAAAATGCTGGAAGAAACTCT CAAGTGGAGAGCCGCATATAAGCCTGAAGAAACCCGCTGGCATGAAATAGCACACGAAGGAGAGACCGGCAAAGTCTTCCGAGCAAATTTTCGAGATCGA GCTGGGAGAACTGTACTCATCATGAGGCCCGGGATGCAGAACACCAACTGCGCGGAGGGCAATATCCGACACTTGGTGTATCTTATTGAGAACACGATTC TCAATCTTCCCGAGACGCAAGAGCAAATGTCTTGGTTGATAGACTTCACTGGGTTCTCGATGAGCACCAGTGTTTCGATCAGGACTGCTCGCGAAATCAT CAACATCTTGCAGAATCACTACCCGGAGAGGCTAGCCATTGCGTTCCTATATAGTCCTCCCAAAATTTTCGAAACGTTCTCCAAGGCTGTAAAATACTTC ATGGATCCAAAAACTAGTCATAAAGTCAAGTTTGTGTACCCAAACAAGAAAGAAAGCGTGGAGCTCATGTGCTCCCTGTTCGACGAGGAGAATCTTCCTA AAGAGTTCGGTGGGAAAGAAGCCTCGTTGCAGTACAACCACGAGGAGTTCTCTCAGTTAATGGCTCAAGACGACGAAAGAACTGCAAATTTCTGGGGATT GGACGAGAAACCAATCAGCATTTCCAGCAGCCTTGCAGGGAATCAGGTCGCCCCGGAGCCAATGCCTCTTGCTCAACCAGCAAACTAG
AA sequence Show only first row Show all	>Lus10014312 pacid=23164661 polypeptide=Lus10014312 locus=Lus10014312.g ID=Lus10014312.BGIv1.0 annot-version=v1.0 MFLRKKQQNGQETDLAQRDVKVNELRAALGPLSGRSLKYCSDGCLRRYLEARNWNVDKARKMLEETLKWRAAYKPEETRWHEIAHEGETGKVFRANFRDR AGRTVLIMRPGMQNTNCAEGNIRHLVYLIENTILNLPETQEQMSWLIDFTGFSMSTSVSIRTAREIINILQNHYPERLAIAFLYSPPKIFETFSKAVKYF MDPKTSHKVKFVYPNKKESVELMCSLFDEENLPKEFGGKEASLQYNHEEFSQLMAQDDERTANFWGLDEKPISISSSLAGNQVAPEPMPLAQPAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	4.1	0.7721
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	4.2	0.8194
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	6.9	0.7982
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	10.1	0.7551
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	13.0	0.7617
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	14.1	0.8130
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	17.0	0.7927
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	19.6	0.7859
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	20.5	0.7996
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	21.4	0.8002

Compare expression of checked genes

Lus10014312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.