Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66780 76 / 4e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026022 [exp] 172 / 1e-56 AT5G66780 111 / 1e-32 unknown protein Lus10024013 [exp] 61 / 4e-13 AT5G66780 64 / 3e-14 unknown protein Lus10041741 [exp] 57 / 6e-11 AT5G66780 65 / 5e-14 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014313 pacid=23164672 polypeptide=Lus10014313 locus=Lus10014313.g ID=Lus10014313.BGIv1.0 annot-version=v1.0 ATGAATCAGACGATAAGATCGTTTCGTATCAATCAACTGCCCACCGCTTTATTATTCCCACAAATATCATCATCTTCTTCAAGTAGTGTTCGTTTCGGGA AGGTGAGGGCGCTCTGTAGCGAACCAGGGAGGGAGCAAAACATGGACAAGTCTGATGCGCAGCCCAAGGACAGAAAAGGGGACGCGATGTCGCATTCATT TGGAGAAGGGTACTCGACGAGGAGCGACGAGGAAGGGTTTGGTGGGGTCTATGGTGGGAACACCGAGGACAATGAGAATCTCGATAAGAAGATTCATGAA GATCACCCTGGTAAATGCAACTTGGATTGTACGTTTTTGACTTTGTGA
AA sequence Show only first row Show all	>Lus10014313 pacid=23164672 polypeptide=Lus10014313 locus=Lus10014313.g ID=Lus10014313.BGIv1.0 annot-version=v1.0 MNQTIRSFRINQLPTALLFPQISSSSSSSVRFGKVRALCSEPGREQNMDKSDAQPKDRKGDAMSHSFGEGYSTRSDEEGFGGVYGGNTEDNENLDKKIHE DHPGKCNLDCTFLTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66780			unknown protein		Lus10014313 [exp]	0	1
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10009332 [exp]	2.0	0.8159
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	12.4	0.7862
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042321 [exp]	12.8	0.8464
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	13.4	0.7234
AT1G55265			Protein of unknown function, D...		Lus10039182 [exp]	14.9	0.8092
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	23.0	0.8258
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	26.7	0.7468
AT3G51530			F-box/RNI-like/FBD-like domain...		Lus10003696 [exp]	32.8	0.7012
AT5G22210			unknown protein		Lus10043407 [exp]	36.8	0.7541
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	39.1	0.7188

Compare expression of checked genes

Lus10014313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.