Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18460 377 / 7e-132 LCV3 like COV 3 (.1) AT2G20130 343 / 1e-118 LCV1 like COV 1 (.1) AT2G20120 340 / 4e-117 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT1G43130 293 / 6e-99 LCV2 like COV 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026023 [exp] 512 / 0 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10011099 [exp] 346 / 3e-119 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10028563 [exp] 310 / 2e-105 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10028564 [exp] 300 / 2e-101 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 300 / 2e-101 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10043220 [exp] 291 / 6e-99 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10018868 [exp] 293 / 4e-98 AT1G43130 387 / 1e-136 like COV 2 (.1) Lus10005681 [exp] 74 / 2e-14 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124100 [exp] 377 / 1e-131 AT2G18460 365 / 2e-128 like COV 3 (.1) Potri.018G082100 [exp] 355 / 4e-123 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.006G158100 [exp] 348 / 2e-120 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.002G065800 [exp] 290 / 8e-98 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 290 / 1e-97 AT1G43130 319 / 2e-110 like COV 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [flax] [poplar] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Lus10014314 pacid=23164665 polypeptide=Lus10014314 locus=Lus10014314.g ID=Lus10014314.BGIv1.0 annot-version=v1.0 ATGGCGACGTCGAGGGAGAGGGATCTGGAGCGCCTGATCCCAATTCCAGGTAAACAGAATAAGGACACCGTCATCAACAATGGCTCCAATTCCTCTTCCT CCAATGTACCCCCCGTCGTCCTTTCCCACACCTCCGGCAAAGAGGCATTTTCCAAGCTGATCCGCAGCTGGGCGTGGAAAAAGTTCATTACCGGAAGTGT GATTCTGCTTCCGATAGCCATCACATTCTGCGTGACCTGGTGGTTCATCCGTTTCGTGGATGGTTTCTTCTCCCCAATCTATGCTCTTCTTGGAATCAAT GTATTTGGGCTTGGGTTTGTGACGTCGCTCACGTTCATATTCCTGGTTGGGGTATTCATGTCCTCCTGGTTGGGCGCTTCTGTACTTAGCTTGGGAGAGT GGTTCATCAACAAGATGCCTTTCGTCAGCTATATTTACTCTGCTTCCAAGCAAATCAGCGCAGCTATCTCCCCAGATCAGAATTCTCATGCGTTCAAGGA GGTTGCCATCATAAAGCATCCACGTAACGGAGAGTACGCGTTTGGGTTCATTACCTCCACTGTGCTTCTGCGTGGCAACTTGGCTACAGAAGAGCTCTGC TGCGTCTATGTTCCCACCAACCACCTCTATCTCGGAGACATTTACCTCGTCAGCTCCAAAGATGTCATGCGGCCAAACCTTTCTGTTCGAGAAGGAATAG AAATCGTGATCTCAGGAGGCATGTCGATACCTGAAATACTTACCACATTGGAAGAACAAGTGATTGATGAAGCAAAGCTTGGCAAGTATGGAGTGCCACG GCATAATCGAGTTAGTACCCAACTCTTGATCGGATCGCCAACACTCACATCTTCCTCCTCACCGCTCTATAAAACGACCCACGAAAGCGACGTCCCTTCA TCCAAAGCTGCAGTCGCCCCCACCACGACCGAACGTGACTATGAGCTTTCGGACGAGGGCTGGGTCCATACTCAGATCAGGCCGTCTGGTTCCCTTGAAA TTAACCAACCGGTCTTGAAATTGCAGGCAGTGGGTCGAGCCGACCGTGTGGGGCCCCAATAA
AA sequence Show only first row Show all	>Lus10014314 pacid=23164665 polypeptide=Lus10014314 locus=Lus10014314.g ID=Lus10014314.BGIv1.0 annot-version=v1.0 MATSRERDLERLIPIPGKQNKDTVINNGSNSSSSNVPPVVLSHTSGKEAFSKLIRSWAWKKFITGSVILLPIAITFCVTWWFIRFVDGFFSPIYALLGIN VFGLGFVTSLTFIFLVGVFMSSWLGASVLSLGEWFINKMPFVSYIYSASKQISAAISPDQNSHAFKEVAIIKHPRNGEYAFGFITSTVLLRGNLATEELC CVYVPTNHLYLGDIYLVSSKDVMRPNLSVREGIEIVISGGMSIPEILTTLEEQVIDEAKLGKYGVPRHNRVSTQLLIGSPTLTSSSSPLYKTTHESDVPS SKAAVAPTTTERDYELSDEGWVHTQIRPSGSLEINQPVLKLQAVGRADRVGPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18460		LCV3	like COV 3 (.1)		Lus10014314 [exp]	0	1
AT1G08710			F-box family protein (.1.2)		Lus10020340 [exp]	13.9	0.5710
					Lus10008493 [exp]	14.4	0.6131
AT5G52280			Myosin heavy chain-related pro...		Lus10016240 [exp]	33.9	0.5588
					Lus10041330 [exp]	44.5	0.5442
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10022959 [exp]	48.4	0.5675
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	53.5	0.5486
					Lus10041470 [exp]	61.7	0.5506
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	79.1	0.5308
AT4G30010			unknown protein		Lus10001623 [exp]	79.3	0.5282
					Lus10002802 [exp]	95.5	0.5116

Compare expression of checked genes

Lus10014314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.