Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69770 746 / 0 CMT3 chromomethylase 3 (.1) AT4G19020 679 / 0 CMT2 chromomethylase 2 (.1) AT1G80740 669 / 0 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1) AT4G13610 208 / 3e-55 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT5G49160 206 / 2e-54 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G14140 203 / 1e-53 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G08990 202 / 3e-53 DNA (cytosine-5-)-methyltransferase family protein (.1) AT1G68580 44 / 0.0003 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026024 [exp] 1536 / 0 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10017720 [exp] 1073 / 0 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 552 / 0 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10019220 [exp] 210 / 9e-56 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10004295 [exp] 210 / 1e-55 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10033679 [exp] 127 / 2e-33 AT1G69770 89 / 2e-20 chromomethylase 3 (.1) Lus10008527 [exp] 50 / 7e-06 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 50 / 8e-06 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10037903 [exp] 46 / 0.0001 AT5G11470 183 / 1e-49 bromo-adjacent homology (BAH) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009600 [exp] 888 / 0 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 653 / 0 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.018G138000 [exp] 220 / 4e-59 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.T046100 [exp] 220 / 4e-59 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 216 / 8e-58 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.003G215800 [exp] 212 / 3e-49 AT1G69770 221 / 7e-62 chromomethylase 3 (.1) Potri.010G126700 [exp] 47 / 6e-05 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.008G119400 [exp] 47 / 7e-05 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.001G104300 [exp] 45 / 0.0002 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10014315 pacid=23164663 polypeptide=Lus10014315 locus=Lus10014315.g ID=Lus10014315.BGIv1.0 annot-version=v1.0 ATGGCTCCCGGAACAGCGGCGACCCAGCGGAAGCGGAAAGCCGCCACTCTTCCGCAGCCATCGGAGCCGAAGAACAGTGGAGTATCGGTTGATCATGAGA TGCAACCTGCTTCTAATGGCGAAATAGAGGTAATTTCCAGTAGTGAGGGAGCCAACTCAGCCTCTACTGCCTCGAAGAGGACCAGGAGGACTAAGGTGAA AAGCGCTGTTTCTAAGGACAAACAACCCTCGACCTCCACTTCGACGGAGGAGATCTCTCCTAAGCGGAAAGCTAGTGCTCAGTCTCAGACTAAGAAGACG AAAAGAAATCCTGACGATGATCAGTCTCAATTTCTTGGGACTCCCTTTTTGGTCGAGGAAGCCAGGAAACGATGGCCAGATCGTTTTGTAAAAAAGGTTG TTCTTTACTCAGACACTGATCAAGAACTTATAGAAGCTCGCCGCCATTACTCACGAGCTAAAGTTGATGGGATTAAATACAAGCTTAACGACAATGCATA TGTCCAGGCTGAAGAAGGCAAGGACAATTATATATGCAAGATAGTAGAAATGTTTGAGGCCGTTGATGGAGAGCTATATATTACTGCACAGTGGTTCTAT AGAGCTAAAGACACTATTATTGAGGACGCTCATAAGATAGATGAGAAACGAGTTTTCCTCTCGGAGATAAAAAATGACAATCCATTGGACTGTCTTCTTA AGAAGCTAAACATTTTGATGTGCCCGCTTGAGGAGGACTGGAAAGCACAAAAGAGTCCAGTTGCAGAATGTGATTACTATTGCAATGCTCTCTACCTACT TCCATTTGCTACATTTATCAAGTTGCCATCAGAAATAATGGATTCAAGTGAAAGCTCATCTACTATATCTCAGTCCTGTGAAATTTCTCAGCCTGATGCC AAGTCAGAGGCATTTACCCTCCTTGACTTGTATTCTGGTTGTGGTGGCATGTCCACTGGCCTCTCGCTAGGTTCTAAATTATCTGGGCAAGAACTCATTA CGAAATGGGCAGTAGACCTTAATAAATATGCTTGTGAGAGTCTTAAGCTAAATCATCCAGAGACAGAGGTGCGGAATGAGAAAGTGGACGACTTCTTAAC ACTGCTGGAGGAATGGGAAAAACTTTGCATAAGGTTTTCCCTGATTAGTAGTAGTGATCCCGAGAAGAAACAGTCTTATCCCTTTGACACAGAAGAGGAG GAGTGTGATTCTGCAGATGAAGAGGATGATGGTGGTGATGATGATGCTCCAGACGATGCAGAATGTTTTGAATTAGAAAAAATCCTTAATATTTGCTACG GACAACCTGAAGATAAGAAATGTGGATTGTATTTTAAGGTACAATGGAAGGGCTATGGTCCTGAATATGACACATGGGAGCCAATTGATGGCTTGGGGAA CTGCTTGAAGGCAATAAGGGAGTTTGTCACAGATGGCTTTAAAAGGATGATATTACCTTTGCCTGGTAGTGCGGATGTGATTTGTGGTGGACCACCGTGC CAAGGCATTAGCGGTTTCAATCGGTTCAGGGATAGAAAAAACCCACTTAATGACGAGAAGAACAAGCAGCTTATTTCTTTCATGGAAGTTGTGAAGTTCC TCAGGCCGAAGTATGTTCTGATGGAGAACGTTGTGGACCTTCTGAAGTTTGCAGAAGGGTACCTAGGCCGTTATGCTGTAGGTCGACTTATTGAGATGAA TTACCAAACCAGAATTGGGATGCTGGCTGCTGGAGCATATGGGCTTCCTCAGTATCGTATGCGATGTTTCCTATGGGGTGCTCTTCCAACACAGGACCTA CCTCCGTACCCAATGCCAACCCATGAAGTTGTCGTGAGAGGAGTCATACCAACCAAGTTTGAGGCGTGTGTTGCTGCTTTTCCCGAGGGGACTAATGTGG AGTTGAAAAAGAAGCTCCTTCTGGAGGACGCTTTGTCAGATCTACCTCCGGTGACAAACAATGAGCAACGTGATGAGATGCCATATACTATGGCACCACA AACTGAGTTTCAGCGGTTGATTAGATTGAGGACACCTGAAGCATTGGACCTTGCATCACCAACGTTGAACTCTCATAGGCCATTTGAATGCAACGCTGAT GATTATGAGAGAATTTGCCACATACCCAAGAAGAAGGGTGCGAATTTTAGAGATTTACCCGGTGTTCGTGTCCGTCCTGACAAAAAGGTTGAATTTGATC CTGACATGGAAAGAGTTCTTTTGACTTCCGGGAAGCATTTGGTTCCAGATTATGCCATGAGTTTTGTGAAAGGAACATCATCGAAGCCTTTTGGTCGTTT GTGGTGGGACCAGACTGTTCCAACTGTGGTTACTAGACCTGAGCCACACAATCAAGTCATCCTACATCCAGAACAAGACCGTGTATTATCAGTTCGTGAA AATGCAAGGTTGCAAGGTTTCCCTGATTACTATAAACTCGTCGGTCCCATTAGGGAAAGGTATATTCAGATTGGGAATGCTGTAGCAGTGCCCGTGGCTA GAGCTCTGGGGTTTGTTCTGGGGAATGCTCTCAAGCATAATGTGGATAGACAACCTCTATTCACTTTGCCAAGTGACTACCTTGAGAGAGCTCATCCGAC TACATCGGCATCATCCCAGGATGAAGCCTGA
AA sequence Show only first row Show all	>Lus10014315 pacid=23164663 polypeptide=Lus10014315 locus=Lus10014315.g ID=Lus10014315.BGIv1.0 annot-version=v1.0 MAPGTAATQRKRKAATLPQPSEPKNSGVSVDHEMQPASNGEIEVISSSEGANSASTASKRTRRTKVKSAVSKDKQPSTSTSTEEISPKRKASAQSQTKKT KRNPDDDQSQFLGTPFLVEEARKRWPDRFVKKVVLYSDTDQELIEARRHYSRAKVDGIKYKLNDNAYVQAEEGKDNYICKIVEMFEAVDGELYITAQWFY RAKDTIIEDAHKIDEKRVFLSEIKNDNPLDCLLKKLNILMCPLEEDWKAQKSPVAECDYYCNALYLLPFATFIKLPSEIMDSSESSSTISQSCEISQPDA KSEAFTLLDLYSGCGGMSTGLSLGSKLSGQELITKWAVDLNKYACESLKLNHPETEVRNEKVDDFLTLLEEWEKLCIRFSLISSSDPEKKQSYPFDTEEE ECDSADEEDDGGDDDAPDDAECFELEKILNICYGQPEDKKCGLYFKVQWKGYGPEYDTWEPIDGLGNCLKAIREFVTDGFKRMILPLPGSADVICGGPPC QGISGFNRFRDRKNPLNDEKNKQLISFMEVVKFLRPKYVLMENVVDLLKFAEGYLGRYAVGRLIEMNYQTRIGMLAAGAYGLPQYRMRCFLWGALPTQDL PPYPMPTHEVVVRGVIPTKFEACVAAFPEGTNVELKKKLLLEDALSDLPPVTNNEQRDEMPYTMAPQTEFQRLIRLRTPEALDLASPTLNSHRPFECNAD DYERICHIPKKKGANFRDLPGVRVRPDKKVEFDPDMERVLLTSGKHLVPDYAMSFVKGTSSKPFGRLWWDQTVPTVVTRPEPHNQVILHPEQDRVLSVRE NARLQGFPDYYKLVGPIRERYIQIGNAVAVPVARALGFVLGNALKHNVDRQPLFTLPSDYLERAHPTTSASSQDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10014315 [exp]	0	1
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	3.5	0.9743
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	3.5	0.9708
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	5.0	0.9685
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	6.2	0.9706
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	6.3	0.9669
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	7.3	0.9685
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	7.7	0.9659
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	8.0	0.9702
AT3G57060			binding (.1.2)		Lus10039013 [exp]	8.7	0.9623
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	8.8	0.9645

Compare expression of checked genes

Lus10014315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.