Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50670 376 / 2e-127 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT2G43370 91 / 8e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 67 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 70 / 7e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G20030 60 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 58 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 58 / 4e-10 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G73530 59 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60000 57 / 5e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71800 58 / 6e-09 CSTF64 cleavage stimulating factor 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026026 [exp] 488 / 9e-171 AT3G50670 470 / 4e-164 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10025557 [exp] 93 / 1e-20 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027015 [exp] 93 / 1e-20 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014814 [exp] 68 / 5e-12 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10027035 [exp] 65 / 6e-11 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017923 [exp] 64 / 1e-10 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10014802 [exp] 63 / 2e-10 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 62 / 2e-10 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10040854 [exp] 58 / 2e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026900 [exp] 414 / 2e-141 AT3G50670 322 / 6e-106 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.005G124300 [exp] 394 / 1e-133 AT3G50670 357 / 8e-120 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.017G033400 [exp] 89 / 2e-19 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 66 / 1e-12 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 69 / 2e-12 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 67 / 5e-12 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 63 / 7e-11 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 61 / 2e-10 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.003G074900 [exp] 58 / 9e-10 AT4G20030 164 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 58 / 1e-09 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] RRM PF12220 [flax] [poplar] U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
Representative CDS sequence Show only first row Show all	>Lus10014317 pacid=23164747 polypeptide=Lus10014317 locus=Lus10014317.g ID=Lus10014317.BGIv1.0 annot-version=v1.0 ATGGGAGACTACAATGATGCGCTAATGCGCAACCAGAACTCTGCTGGTCGCGGCGCTACCAAGCAGCAAAACCGCGCTAATGTTCTCCAGCTCAAACTGA TTGGGCAAAGCCATCCTACCGGATTAACTGCAAACCTTCTGAAACTGTTTGAGCCTCGCCCTCCTTTGGAATTTAAACCCCCACCGGAAAAGAGAAAATG CCCGCCTTACTTTGGTATGGCACAGTTTGTGACTAATTTTGCCGAGCCTGGTGACCCTGAATATGCTCCACCTGTTCAGGAAGCTGAAACTCCTATGCAA AGGCGAGCCAGAATCCACAAGTTACGGTTGGAAAAAGGTGCAGAGCATGCTGCTGAAGAGCTTAAAAACTATGATCCAGCTAATGACCCCAATGTTTCTG GAGATCCATACAAAACATTGTTCGTGGCTAGGCTGAGTTATGAGACATCAGAGAGTAGGATTAAAAGGGAGTTTGAGTCTTATGGACCAATAAAAAGGGT TCGACTGGTGACAGATAAAGATACAAATAAACCCAAAGGCTATGCCTTCATAGAATATGTGCATACACGAGACATGAAAACTGCATACAAACAAGCTGAT GGAAGGAAGATTGATGGCAGAAGGGTACTTGTTGATGTCGAGCGTGGTAGAACTGTCCCAAATTGGAGACCTCGCAGGCTTGGTGGTGGACTTGGGACTA GCAGAGTCGGGAGCGAAGAAGTTGCTGCAAGAGAAACACAGCAACCACAAGGTCCATCACGGTCTGAAGAACCGAAGGCACATGATGATCATATTGTTGA AAGAGAAAAGTCCCGTGAAAGAGGGAGGGAGAGGGAAAGAGAAAAGTCTCGCGAGATATCCCATGAACGTCCAAGGGATCGTGACCGTAGGGAGGATAGG CACCACAGAGACCGTGACAGGGAAAAAGACAAGGACCGTGATGGTCGTCGTGATCGCGACAGAGACAGGGATGGCCGTCGTGATCGAGGTCGTGACCATA ACCGCGACCGCGAAAGAGGTCGAGAACACGGTAAGGACCGCGATCGAACAAGAGATAGGGATTATGATGGTGGAGATGACGACCGTGGGCGTTCCCGTGA TAGAGAGCATACCTATGATCGTGTAGACTCGAAACATGATAGGGATCGTGGGGATCCGGATTATGATCATGCTGATGGTGAGGAAGATCACGGCTGGTAT GAAAAACCCGAACAGGGACGCAAGAGGTCTGCTGATGTAGAGCAACAGTATGACCACTATGACCATCATCGAGGTAAGCGAAGTAAGGGACAGTACGATC CCTTGGATGTTCACGGTGATGATGACCATTATGATCAGTATGCTGATCGTGACCGTGATCGATATGGTGCGGTGGATGATGATGCCTACCGCTATGATTG A
AA sequence Show only first row Show all	>Lus10014317 pacid=23164747 polypeptide=Lus10014317 locus=Lus10014317.g ID=Lus10014317.BGIv1.0 annot-version=v1.0 MGDYNDALMRNQNSAGRGATKQQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYFGMAQFVTNFAEPGDPEYAPPVQEAETPMQ RRARIHKLRLEKGAEHAAEELKNYDPANDPNVSGDPYKTLFVARLSYETSESRIKREFESYGPIKRVRLVTDKDTNKPKGYAFIEYVHTRDMKTAYKQAD GRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGSEEVAARETQQPQGPSRSEEPKAHDDHIVEREKSRERGREREREKSREISHERPRDRDRREDR HHRDRDREKDKDRDGRRDRDRDRDGRRDRGRDHNRDRERGREHGKDRDRTRDRDYDGGDDDRGRSRDREHTYDRVDSKHDRDRGDPDYDHADGEEDHGWY EKPEQGRKRSADVEQQYDHYDHHRGKRSKGQYDPLDVHGDDDHYDQYADRDRDRYGAVDDDAYRYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	0	1
AT2G30480			unknown protein		Lus10019109 [exp]	1.7	0.7877
					Lus10019108 [exp]	3.2	0.7688
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	4.2	0.7974
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	6.6	0.7975
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	9.2	0.7743
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	11.2	0.7572
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10033174 [exp]	11.7	0.7367
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	12.4	0.7663
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	17.5	0.7864
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	17.9	0.7289

Compare expression of checked genes

Lus10014317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.