Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 535 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 502 / 4e-175 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24550 486 / 5e-169 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G49270 473 / 2e-163 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 463 / 2e-159 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G52290 445 / 5e-155 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 427 / 5e-148 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G23540 425 / 3e-144 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 419 / 6e-142 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 407 / 1e-137 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024020 [exp] 640 / 0 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 630 / 0 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014319 [exp] 545 / 0 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026027 [exp] 499 / 6e-176 AT2G18470 420 / 5e-141 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10011098 [exp] 503 / 1e-175 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 499 / 1e-173 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 488 / 1e-169 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 471 / 5e-166 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 474 / 2e-164 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027000 [exp] 547 / 0 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.005G124400 [exp] 540 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 516 / 1e-180 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.009G115200 [exp] 487 / 2e-169 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 486 / 9e-169 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 448 / 2e-155 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 441 / 1e-152 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G189700 [exp] 431 / 3e-146 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 423 / 4e-143 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 421 / 2e-142 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014318 pacid=23164656 polypeptide=Lus10014318 locus=Lus10014319.g ID=Lus10014318.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCGGAGGTGTCGCGCAGTCGAATCTGTTGGGACAGGGAGGGTTCGGGTATGTGCATAAGGGGGTTTTGCCCAACGGGAAGGAAGTAGCGG TGAAGAGCTTGAAATCTGGGAGCGGGCAAGGGGAGAGGGAATTCATGGCGGAGGTTGAGATTATTAGTAGAGTTCATCATAGGCATCTTGTGTCGCTGGT TGGATACTCCATTACTGATCAGCAGAGGCTCTTGGTCTACGAGTTCCTCCCTAACGACACCCTTGAACATCATCTCCACGGAAGAGGTCTCCCGATTATG GATTTCCCTACCAGGCTCAAAATAGCACTGGGTTCTGCCAAGGGACTTGCTTACCTCCATGAAGATTGCCACCCGAAGATCATTCATCGTGATATCAAGT CGTCCAACATTCTCCTTGACTTGAACTTTGAAGCTAAGGTGGCTGACTTTGGGTTGGCCAAGCTCTCTACCGACAATCACACTCATGTCTCGACTCGCGT AATGGGCACATTCGGATATTTAGCTCCGGAATACGCATCGAGCGGCAAGCTGACTGAGAAGTCCGACGTGTTTTCATTTGGAATCATGCTGCTGGAACTC ATTACCGGAAAGAGACCTGTAGATCCGACGAATGTCATGGAAGATAGTTTGGTGGACTGGGCTAGGCCGCTTCTAACCAGAGCATTGGATGAAGGCAATT TCAACGAGTTGGTCGACCTCAAAATGGAGGGAAATTTCAATCCGAACGAAATGCATCGGATGATTGCTTGTGCCGCCGCCAGCATTCGCCACTCTGCTAA AAAACGCCCCAAGATGAGCCAGATAGTACACACGTTAGAAGGAGACGCATCGCTGGACGACTTGAACGACGGGATAAGGCCCGGCCAAAGTTCGGTCTTC GGTGCAGCCGGTGGGAGCGGAGGCGGGACCTACGACATGGATGCTTACAATGCTGACATGGCAAGGTTCCGACAGGTGGCATTGGCTAGCCAGGAATTCG ACAGCAGCGAACACGGGACAGCCTCATCGAGTAGCGATTCTCGGGACTTGGCACCTGCGGCTCTTCGCAAGTACAATTTGTAA
AA sequence Show only first row Show all	>Lus10014318 pacid=23164656 polypeptide=Lus10014318 locus=Lus10014319.g ID=Lus10014318.BGIv1.0 annot-version=v1.0 MAATGGVAQSNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGYSITDQQRLLVYEFLPNDTLEHHLHGRGLPIM DFPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKSSNILLDLNFEAKVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLEL ITGKRPVDPTNVMEDSLVDWARPLLTRALDEGNFNELVDLKMEGNFNPNEMHRMIACAAASIRHSAKKRPKMSQIVHTLEGDASLDDLNDGIRPGQSSVF GAAGGSGGGTYDMDAYNADMARFRQVALASQEFDSSEHGTASSSSDSRDLAPAALRKYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10014318 [exp]	0	1
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	5.7	0.7849
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	7.1	0.7433
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	8.7	0.7750
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	12.8	0.7407
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	13.0	0.7662
AT4G26240			unknown protein		Lus10012919 [exp]	15.2	0.7474
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	21.3	0.7680
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	21.8	0.7547
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	22.2	0.7194
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	23.5	0.7597

Compare expression of checked genes

Lus10014318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.