Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 438 / 3e-149 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 426 / 7e-144 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24550 420 / 6e-142 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G49270 406 / 9e-136 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 397 / 2e-132 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G52290 377 / 1e-126 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 367 / 4e-123 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G23540 367 / 1e-120 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 359 / 2e-117 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 343 / 1e-111 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014318 [exp] 542 / 0 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10024020 [exp] 517 / 0 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 507 / 9e-177 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026027 [exp] 430 / 2e-147 AT2G18470 420 / 5e-141 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10011098 [exp] 429 / 3e-145 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 426 / 2e-143 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 416 / 3e-140 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 402 / 1e-137 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 405 / 4e-136 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027000 [exp] 456 / 5e-156 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.005G124400 [exp] 451 / 2e-154 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 436 / 1e-147 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 407 / 9e-137 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 405 / 6e-136 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 385 / 3e-129 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 378 / 2e-126 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G189700 [exp] 374 / 1e-122 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 358 / 7e-117 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 356 / 4e-116 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014319 pacid=23164655 polypeptide=Lus10014319 locus=Lus10014319.g ID=Lus10014319.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCGGAGGTGTCGCGCAGTCGAATCTGTTGGGACAGGGAGGGTTCGGGTATGTGCATAAGGGGGTTTTGCCCAACGGGAAGGAAGTAGCGG TGAAGAGCTTGAAATCTGGGAGCGGGCAAGGGGAGAGGGAATTCATGGCGGAGGTTGAGATTATTAGTAGAGTTCATCATAGGCATCTTGTGTCGCTGGT TGGATACTCCATTACTGATCAGCAGAGGCTCTTGGTCTACGAGTTCCTCCCTAACGACACCCTTGAACATCATCTCCACGGAAGAGGTCTCCCGATTATG GATTTCCCTACCAGGCTCAAAATAGCACTGGGTTCTGCCAAGGGACTTGCTTACCTCCATGAAGATTGCCACCCGAAGATCATTCATCGTGATATCAAGT CGTCCAACATTCTCCTTGACTTGAACTTTGAAGCTAAGGTGGCTGACTTTGGGTTGGCCAAGCTCTCTACCGACAATCACACTCATGTCTCGACTCGCGT AATGGGCACATTCGGATATTTAGCTCCGGAATACGCATCGAGCGGCAAGCTGACTGAGAAGTCCGACGTGTTTTCATTTGGAATCATGCTGCTGGAACTC ATTACCGGAAAGAGACCTGTAGATCCGACGAATGAAATGCTTCGGATGATTGCTTGTCCCGCCGCCAGCATTCGCCACTCTGCTAAAAAACGCCCCAAGA TGAGCCAGATAGTACACACGTTAGAAGGAGACGCATCGCTGGACGACTTGAACGACGGGATAAGGCCCGGCCAAAGTTCGGTCTTCGGTGCAGCCGGTGG GAGCGGAGGCGGGACCTACGACATGGATGCTTACAATGCTGACATGGCAAGGTTCCGACAGGTGGCATTGGCTAAGCAAGGAATTGACACACGACNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNGAGATGA
AA sequence Show only first row Show all	>Lus10014319 pacid=23164655 polypeptide=Lus10014319 locus=Lus10014319.g ID=Lus10014319.BGIv1.0 annot-version=v1.0 MAATGGVAQSNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGYSITDQQRLLVYEFLPNDTLEHHLHGRGLPIM DFPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKSSNILLDLNFEAKVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLEL ITGKRPVDPTNEMLRMIACPAASIRHSAKKRPKMSQIVHTLEGDASLDDLNDGIRPGQSSVFGAAGGSGGGTYDMDAYNADMARFRQVALAKQGIDTRXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	0	1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	4.4	0.8290
					Lus10024538 [exp]	8.5	0.8008
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10014318 [exp]	12.8	0.7407
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	13.6	0.7916
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10036507 [exp]	14.8	0.7293
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	16.6	0.7757
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	16.9	0.7684
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	24.4	0.7358
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	24.6	0.7675
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012483 [exp]	28.4	0.7488

Compare expression of checked genes

Lus10014319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.