Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 74 / 2e-14 F-box family protein (.1) AT5G07610 73 / 4e-14 F-box family protein (.1) AT1G15680 58 / 3e-09 F-box family protein (.1) AT3G23950 56 / 2e-08 F-box family protein (.1) AT1G27340 52 / 4e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 50 / 1e-06 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G03970 50 / 1e-06 F-box associated ubiquitination effector family protein (.1.2) AT3G20620 50 / 2e-06 F-box family protein-related (.1) AT1G11620 49 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT1G62270 48 / 7e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041733 [exp] 201 / 5e-60 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 199 / 1e-59 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10026028 [exp] 155 / 3e-47 ND 37 / 6e-04 Lus10015048 [exp] 79 / 7e-16 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 61 / 6e-10 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 59 / 2e-09 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10015775 [exp] 57 / 1e-08 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042989 [exp] 55 / 1e-08 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10007855 [exp] 55 / 4e-08 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027300 [exp] 421 / 4e-147 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.005G124500 [exp] 218 / 3e-67 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.007G027200 [exp] 211 / 7e-65 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.015G028500 [exp] 101 / 8e-24 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.010G254000 [exp] 98 / 2e-22 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.001G318400 [exp] 76 / 4e-15 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.010G224400 [exp] 69 / 1e-12 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.007G037500 [exp] 65 / 2e-11 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.010G149000 [exp] 65 / 2e-11 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.003G171300 [exp] 65 / 3e-11 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014320 pacid=23164650 polypeptide=Lus10014320 locus=Lus10014320.g ID=Lus10014320.BGIv1.0 annot-version=v1.0 ATGGATAGAGGAAAGAAGCAGGGGAAGTTCATTACTAACAAGAACAGTGCAATTTACATGGATCTCAAGGACATCATTAGGGAGAAAGCTCTTCATTACC TTCCTGCCAAATCCCTCCGCAGATGCACTGCCATCTGCCGCGACTGGAAGTTGCAGATATCAACTCCTTTCTTCGCCCACAGCCAGTCAAATACTTTCCG TGATGTATCAGGATTCTTCTGTCAATCAGTGCCCGGGTCACCGAAGTTCATTTCCATTGATCCAAAAGCATATGGTGTTCCTGACCCATCCTTCAGCTTC CTCCCTGAACCAGTGTCAGTCAGATGTGCATCTAATGGGCTAGTTTGCTGCCAGGGCTTAAAGGGTTGCAAACCCTACTACATCTGCAATCCAGTCACTA AGCGCTGGAAGAAACTCCCCAAACCTACTGCTAACCATGGCTCCGAGCCGGCCATTGTAATGGCCTTTGAGCCTTCGCGACTCAACTTTGTTGCCGAGTA CAATCTTGTTTGTGCATTTCAATCTGACCTGGACGGGGTTGAATTCGAGATATATTCTTCCGCTGATGAAACTTGGAGAATCTCCGGAGAGATTTGCTTT GGCGACAGGAAGCCGGTACCGAGTTCAGGCATCTTCGCCGGTGGTATCGCTTACTGGCAGTTGAAGTGTAGTGGTAATATTTTAGCCTTTGATCTGACAA GTGAGCGCTCTACTCTTCAGCACTCCCAGGGTAATGTTATTGGGTGTGTGAACGACAAACTCTACTGTTGTTACACCCGCTGCCAGACGATATACCTTGC TGAACTATCCAATGCCTTCACCAATACAATGGAGATGGATTCGAGAACCGAAGCCTGGAAGGTTAAGCATCAAATTACCATCGATCCTTCTGTTTTGCAG GGGGATGTATTGACTAGAAGCATAATCTTCTTCGCTGGTAACATGGTGGTTATTCAAGGAAGGAGTAAGATTTTCGGCTGGGACACCAGGACCAAAGCAG TAAAGGAATTGGGTGATGGTACAGCAAATTTGTCGTCCGGCGCGGTTCCATATATTAATAGCCTTGTTGAGATATGA
AA sequence Show only first row Show all	>Lus10014320 pacid=23164650 polypeptide=Lus10014320 locus=Lus10014320.g ID=Lus10014320.BGIv1.0 annot-version=v1.0 MDRGKKQGKFITNKNSAIYMDLKDIIREKALHYLPAKSLRRCTAICRDWKLQISTPFFAHSQSNTFRDVSGFFCQSVPGSPKFISIDPKAYGVPDPSFSF LPEPVSVRCASNGLVCCQGLKGCKPYYICNPVTKRWKKLPKPTANHGSEPAIVMAFEPSRLNFVAEYNLVCAFQSDLDGVEFEIYSSADETWRISGEICF GDRKPVPSSGIFAGGIAYWQLKCSGNILAFDLTSERSTLQHSQGNVIGCVNDKLYCCYTRCQTIYLAELSNAFTNTMEMDSRTEAWKVKHQITIDPSVLQ GDVLTRSIIFFAGNMVVIQGRSKIFGWDTRTKAVKELGDGTANLSSGAVPYINSLVEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	0	1
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001590 [exp]	3.0	0.7484
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	3.2	0.7158
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	13.3	0.6874
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	15.5	0.6363
AT3G22430			unknown protein		Lus10021917 [exp]	17.7	0.6756
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	18.6	0.6868
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	20.5	0.6386
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	25.0	0.7104
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10026063 [exp]	27.9	0.6272
					Lus10008157 [exp]	28.5	0.6701

Compare expression of checked genes

Lus10014320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.