Plant FIBer expression Database

Lus10014321 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50685 156 / 4e-49 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026029
[exp]
238 / 2e-81 AT3G50685 207 / 2e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G027400
[exp]
160 / 7e-51 AT3G50685 164 / 1e-52 unknown protein
PFAM info
Representative CDS sequence
>Lus10014321 pacid=23164770 polypeptide=Lus10014321 locus=Lus10014321.g ID=Lus10014321.BGIv1.0 annot-version=v1.0
ATGCTGTCAATATCCTCGCCACCGACGGCAGCCTCAATACCGTCCGCATTCCATTTCCACCACCGCGGCGGCAACTTTTTTGTCACCGTCGCAACCAGGC
TCTCAAACCACCACCATCGCCGCGGCCTCAGAGTGTTAGCCAAGGCGGCGGAGGAGAGCAGCGGCGTGGCAGAGAAGGCGGCAATAGCAGGGGGATTGAT
CTCAACACCAGTAATCGCATGGTCGCTGTATACCCTCAAGACCACCGGGTGCGGCCTCCCGCCGGGACCGGGAGGGTCAATCGGAGCGCTGGAAGGAGTG
AGTTACCTGGCGGTGGTGGGAATCATCGGGTGGTCTGTTTACACCAAGTCCAAAACCGGGTCAGGTCTTCCCAACGGGCCGTTCGGGTTGCTGGGCGCCG
TAGAGGGGCTGTCGTATCTTTCCTTGGTTGCGATCTTGGTTGTATTTGGTCTTCAGTTTCTGGATAAAGGCTACATTCCCGGGGCGGTTCCAGTTCCCGG
CGATCAGTGTTTCGGGTAG
AA sequence
>Lus10014321 pacid=23164770 polypeptide=Lus10014321 locus=Lus10014321.g ID=Lus10014321.BGIv1.0 annot-version=v1.0
MLSISSPPTAASIPSAFHFHHRGGNFFVTVATRLSNHHHRRGLRVLAKAAEESSGVAEKAAIAGGLISTPVIAWSLYTLKTTGCGLPPGPGGSIGALEGV
SYLAVVGIIGWSVYTKSKTGSGLPNGPFGLLGAVEGLSYLSLVAILVVFGLQFLDKGYIPGAVPVPGDQCFG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G50685 unknown protein Lus10014321
[exp]
0 1
AT1G70820 phosphoglucomutase, putative /... Lus10009327
[exp]
2.4 0.8773
AT2G21960 unknown protein Lus10006822
[exp]
3.5 0.8612
AT4G17090 CT-BMY, BMY8, B... BETA-AMYLASE 8, BETA-AMYLASE 3... Lus10011035
[exp]
7.1 0.8641
AT4G34730 ribosome-binding factor A fami... Lus10018065
[exp]
12.2 0.8539
AT1G08550 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EP... Lus10021986
[exp]
15.4 0.8698
AT1G30260 AGL79 unknown protein Lus10038517
[exp]
16.7 0.8218
AT1G01250 AP2_ERF Integrase-type DNA-binding sup... Lus10005967
[exp]
18.8 0.7822
AT3G55120 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE ... Lus10003311
[exp]
19.8 0.7686
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Lus10042469
[exp]
21.0 0.8314
AT4G17090 CT-BMY, BMY8, B... BETA-AMYLASE 8, BETA-AMYLASE 3... Lus10003005
[exp]
25.3 0.8111

Lus10014321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.