Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65650 219 / 3e-73 Protein of unknown function (DUF1195) (.1) AT4G36660 207 / 9e-69 Protein of unknown function (DUF1195) (.1) AT1G19380 94 / 1e-24 Protein of unknown function (DUF1195) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026030 [exp] 297 / 4e-104 AT4G36660 239 / 1e-81 Protein of unknown function (DUF1195) (.1) Lus10007156 [exp] 131 / 3e-39 AT4G36660 142 / 1e-43 Protein of unknown function (DUF1195) (.1) Lus10010810 [exp] 116 / 4e-33 AT4G36660 152 / 3e-47 Protein of unknown function (DUF1195) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125000 [exp] 229 / 8e-78 AT5G65650 204 / 1e-67 Protein of unknown function (DUF1195) (.1) Potri.007G027700 [exp] 227 / 6e-77 AT5G65650 206 / 2e-68 Protein of unknown function (DUF1195) (.1) Potri.014G181600 [exp] 141 / 8e-43 AT4G36660 157 / 4e-49 Protein of unknown function (DUF1195) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06708 [flax] [poplar] DUF1195 Protein of unknown function (DUF1195)
Representative CDS sequence Show only first row Show all	>Lus10014322 pacid=23164668 polypeptide=Lus10014322 locus=Lus10014322.g ID=Lus10014322.BGIv1.0 annot-version=v1.0 ATGAAGGATGACGATTCTCTTCCTACATCGACAGCCACGACGGCGACAGGCTATGTGAAGAAGGACACCTCAGATTCATCTCTATTTGGGAAAGGCAGGT ACAAGTTCTGGGCCTTGGCTGCCATTATTCTATTGGCATTTTGGTCTATGTTCACCGGAACCGTCACTCTCCGATGGTCCGCCGGAAACCTCAACCGTCT CTCGGACGACATCGATATTCCTATTCACGACGATCTCGACGTCCTTGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCATATTTGGGATGTGTACACTAAC AGCCGTCGGATCAGATTACCAAGGTTCTGGGAGGAAGCGTTTGAAGCTGCTTACGAGGATTTGACTAGCGACGTCCCTGGAGTCAGAGAGGCTGCCATTA CGGAGGTTGCTAAGATGTCTGTCTACTCCATTGATCTTGATCCTCCCCCTGTTCAATCCACGAATGTAAGAGAGATAAGCAAGAGTCTCAAGCTCATGGA AAACGGTGGCGGCGGTGGCGCTTCTACGGTGACTTCCAAAGGGATCCACTGA
AA sequence Show only first row Show all	>Lus10014322 pacid=23164668 polypeptide=Lus10014322 locus=Lus10014322.g ID=Lus10014322.BGIv1.0 annot-version=v1.0 MKDDDSLPTSTATTATGYVKKDTSDSSLFGKGRYKFWALAAIILLAFWSMFTGTVTLRWSAGNLNRLSDDIDIPIHDDLDVLEMEEREKVVKHIWDVYTN SRRIRLPRFWEEAFEAAYEDLTSDVPGVREAAITEVAKMSVYSIDLDPPPVQSTNVREISKSLKLMENGGGGGASTVTSKGIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	0	1
AT4G35320			unknown protein		Lus10001621 [exp]	1.4	0.9265
AT3G49720			unknown protein		Lus10007228 [exp]	2.0	0.9231
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	2.8	0.8417
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	3.9	0.8888
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	6.5	0.8188
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	10.7	0.8453
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	11.2	0.8443
AT4G35320			unknown protein		Lus10022985 [exp]	12.2	0.8293
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	13.9	0.8331
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	14.0	0.8317

Compare expression of checked genes

Lus10014322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.