Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36730 249 / 3e-81 bZIP GBF1 G-box binding factor 1 (.1.2) AT2G35530 118 / 6e-30 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 112 / 4e-28 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT2G46270 93 / 4e-21 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 92 / 1e-20 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT5G60830 59 / 4e-10 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT1G13600 57 / 2e-09 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G38800 56 / 3e-09 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT3G49760 56 / 3e-09 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT2G18160 56 / 4e-09 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026033 [exp] 540 / 0 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10041720 [exp] 416 / 2e-146 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10024030 [exp] 405 / 6e-142 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10003034 [exp] 92 / 2e-20 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10005146 [exp] 91 / 4e-20 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10029101 [exp] 57 / 2e-09 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 57 / 3e-09 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10013059 [exp] 56 / 7e-09 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10003255 [exp] 53 / 2e-07 AT1G19490 194 / 2e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029400 [exp] 354 / 8e-122 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.005G126000 [exp] 343 / 3e-117 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.003G097600 [exp] 128 / 1e-33 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 119 / 2e-30 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.002G167100 [exp] 100 / 2e-23 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 93 / 7e-21 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.007G006900 [exp] 59 / 8e-10 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.010G135200 [exp] 59 / 8e-10 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.015G047700 [exp] 58 / 8e-10 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.008G113400 [exp] 58 / 1e-09 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor CL0018 [flax] [poplar] PF07777 [flax] [poplar] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Lus10014324 pacid=23164725 polypeptide=Lus10014324 locus=Lus10014324.g ID=Lus10014324.BGIv1.0 annot-version=v1.0 ATGGGAACAGGTGAAGAGAACACACCTGCTAAGCCGTCTAAGCCGGCAGCTTCTTCGACTCAGGAAGCTCCAACAACACCTGCATATCCTGAGTGGCCGG GTTCCATGCAGGTTTATTATGGTGCTGGAGCTACTCCACCGTTTTTCCCATCAAGTGTCGCCTCTCCTCACCCTTATGTATACCAACATCCCATGATGCC ACATTATGGGACCCCAGTTCCTTACCCAGCTATGTATCCTGGGGGTGTATATGCGCATCCTAACATGGCCATGACACCAAATTCTATGGCGCCAAGCATG GAAATGGAGGGAAAGGCGGCTAATGGAAAGGATCAACCTTCTGGCAAGAAATCAAAGGGAGCGTCTGCAAGCAAAGGTGGAGAGAGCCGAAAAGTAGCTT CTGGTTCAGGAAATGATGCTGTCTCCCAAAGCGGAGAAAGTGGGAGTGACGGCTCATCAGATGGTAGCGATGAACAGCAGGAATATACTGGAAGGAAGAA GGGAAGCTTTAACCAGATGCTTGCAGATGCCAATGCACAAAACAACACTGCAGCGCCGAATGCCCAAGGTGCTTTTCCTGTTGTATCTGTGCCTGGAACC AATCTAAATATTGGGATGGACTTATGGAATGCCTCTCCGGCTGCTGCTGCTTTAGGAACAGCAAAAATGAGGTCTGGTGGCACTTCAGGAATTGTTCCCA CTCCTGAACAGTGGGGTCAGCAGGATGAACGTGAAGTGAAAAGACAGAAGAGAAAGCAGTCCAACAGGGAGTCTGCCAGAAGATCGAGGTTGCGCAAGCA GGCTGAATGTGAAGAGCTGCAACACAAGGTGGAAAACTTGAACAGTGACAATCACAATCTTAAAAATGAGTTGCTGAGACTCTCGGAGGAGTGCGAGAAG CTGAAAGCTGAGAACGATTCCATCAAGAAAAAGCTGAAGGAATCATACGGGCAAGAAGCAACAGATCAACTCGAGCAAAACGATTCGGGGCGGGGTGATG AAGGCAATAGTTGA
AA sequence Show only first row Show all	>Lus10014324 pacid=23164725 polypeptide=Lus10014324 locus=Lus10014324.g ID=Lus10014324.BGIv1.0 annot-version=v1.0 MGTGEENTPAKPSKPAASSTQEAPTTPAYPEWPGSMQVYYGAGATPPFFPSSVASPHPYVYQHPMMPHYGTPVPYPAMYPGGVYAHPNMAMTPNSMAPSM EMEGKAANGKDQPSGKKSKGASASKGGESRKVASGSGNDAVSQSGESGSDGSSDGSDEQQEYTGRKKGSFNQMLADANAQNNTAAPNAQGAFPVVSVPGT NLNIGMDLWNASPAAAALGTAKMRSGGTSGIVPTPEQWGQQDEREVKRQKRKQSNRESARRSRLRKQAECEELQHKVENLNSDNHNLKNELLRLSEECEK LKAENDSIKKKLKESYGQEATDQLEQNDSGRGDEGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	0	1
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10026033 [exp]	1.0	0.9365
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	4.7	0.9052
AT5G26770			unknown protein		Lus10031444 [exp]	9.5	0.8507
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	15.6	0.8742
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	16.0	0.8450
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	20.9	0.8734
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	27.7	0.8835
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	29.0	0.8320
AT5G19950			Domain of unknown function (DU...		Lus10000162 [exp]	29.1	0.8057
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	29.4	0.8568

Compare expression of checked genes

Lus10014324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.