Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36750 338 / 6e-118 Quinone reductase family protein (.1) AT4G27270 250 / 2e-84 Quinone reductase family protein (.1) AT5G54500 250 / 3e-84 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT5G58800 226 / 1e-74 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026035 [exp] 429 / 3e-154 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10041718 [exp] 382 / 2e-135 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10040486 [exp] 268 / 6e-91 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10018401 [exp] 248 / 3e-83 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10006748 [exp] 246 / 1e-82 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10020076 [exp] 241 / 1e-80 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10007612 [exp] 240 / 1e-79 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10024032 [exp] 235 / 4e-79 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1) Lus10005862 [exp] 226 / 6e-75 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029600 [exp] 355 / 1e-124 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.005G126200 [exp] 352 / 7e-124 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.004G151100 [exp] 311 / 2e-107 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) Potri.001G410700 [exp] 255 / 2e-86 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.011G129400 [exp] 250 / 3e-84 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.004G028900 [exp] 247 / 5e-83 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.011G033100 [exp] 246 / 1e-82 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.009G044400 [exp] 235 / 3e-78 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10014325 pacid=23164744 polypeptide=Lus10014325 locus=Lus10014325.g ID=Lus10014325.BGIv1.0 annot-version=v1.0 ATGGGAAAAGGCGGCGGCTGCGTTCCTAGCAAGAAAAAACACCCTCCAGTCGCCGATAACCCTCCTCAACAGCCGCCACCCTCAATCGACGCCACCACCA CCACCACCACCGGCGAAAACCACGCGACCACAGGCGTATCGGCTGCTTCCTACGCGAACTTGAAGGTGTTCGTTGTTTTCTACTCGATGTACGGCCACGT GGAGTTGTTGGCCCGGAGGATGAAGAATGGCGTCGAAGGAGTGGAAGGGGTAGATGCAGTGCTGTATCGCGTTCCGGAGACGCTTCCGGCGGAGGTTCTG GAGCAGATGAAGGCGCCGCCGAAGGACATTTCGATTCCCGAGATAACGGCGTTGGAGTTGGTGGAGGCCGATGCGATTCTGTTTGGGTTTCCGACGAGGT ACGGGTCAATGGCGGCGCAGATGCAGTCGTTTTTCGATTCCACGGGTCAGCTGTGGAACAAGCAGAAGCTAGCCGGGAAGCCGGCTGGGTTTTTTGTTAG TACCGGAACCCAAGGCGGTGGTCAAGAAACGACGGCATGGACAGCAATAACTCAGTTGGTTCACCACGGAATGCTATTTGTTCCTGTGGGCTACACGTTT GGTGCTGATATGTTCAAGATGGATTCTATCAGAGGCGGATCTCCGTATGGTGCTGGAGTTTATGCTGGTGATGGTTCTAGACAACCAAGTGAGACGGAGC TAGCACTTGCGGAACATCAGGGCAAGTATATGGCAACAATAGTCAAGAAGTTGGCTCATTCTTGA
AA sequence Show only first row Show all	>Lus10014325 pacid=23164744 polypeptide=Lus10014325 locus=Lus10014325.g ID=Lus10014325.BGIv1.0 annot-version=v1.0 MGKGGGCVPSKKKHPPVADNPPQQPPPSIDATTTTTTGENHATTGVSAASYANLKVFVVFYSMYGHVELLARRMKNGVEGVEGVDAVLYRVPETLPAEVL EQMKAPPKDISIPEITALELVEADAILFGFPTRYGSMAAQMQSFFDSTGQLWNKQKLAGKPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPVGYTF GADMFKMDSIRGGSPYGAGVYAGDGSRQPSETELALAEHQGKYMATIVKKLAHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36750			Quinone reductase family prote...		Lus10014325 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018425 [exp]	1.0	0.8381
AT1G72430			SAUR-like auxin-responsive pro...		Lus10037443 [exp]	6.9	0.7832
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	8.4	0.8093
AT4G33625			unknown protein		Lus10020442 [exp]	9.5	0.8056
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	10.5	0.8238
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	12.0	0.8126
AT4G12410			SAUR-like auxin-responsive pro...		Lus10032237 [exp]	14.4	0.7664
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	14.9	0.8142
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	17.5	0.7935
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037456 [exp]	18.2	0.7876

Compare expression of checked genes

Lus10014325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.