Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75080 206 / 9e-66 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT1G19350 184 / 2e-56 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT3G50750 152 / 2e-45 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT4G36780 93 / 1e-22 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT4G18890 54 / 1e-08 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT1G78700 49 / 1e-06 BZR BEH4 BES1/BZR1 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026036 [exp] 378 / 2e-133 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014327 [exp] 374 / 5e-132 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 164 / 4e-49 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10010795 [exp] 119 / 4e-32 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10029270 [exp] 57 / 2e-09 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10007319 [exp] 56 / 6e-09 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1) Lus10015238 [exp] 50 / 4e-07 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10005419 [exp] 50 / 5e-07 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G030700 [exp] 232 / 5e-76 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.005G126400 [exp] 226 / 3e-73 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.014G041600 [exp] 181 / 6e-56 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 164 / 2e-49 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.011G106800 [exp] 59 / 3e-10 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 58 / 9e-10 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.003G026600 [exp] 57 / 2e-09 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.011G071800 [exp] 55 / 1e-08 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1) Potri.004G062400 [exp] 49 / 7e-07 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10014326 pacid=23164716 polypeptide=Lus10014326 locus=Lus10014326.g ID=Lus10014326.BGIv1.0 annot-version=v1.0 ATGATCTGTTCTCAGGGGTGCAAGCCGCTGCCTGGTGAAATTGCAGGAACTCCACTAAGCTTTAGCGGAGGTTCATCCATTCAGCCAAGTCCACAAACTT CAAACTTCCAAAGTCCGGTGATTTCCTACCAAGCTAGCCCAACATCATCATCATTCCCAAGTCCTTCTCGTTTTGAAGCCAACCCATCAGCATACCTCCT TCCTTTACTCCGTAACATAGCTTCAATCCCCACAAACTTGCCTCCTCTTAGGATATCCAACAGTGCCCCAGTAACTCCTCCGCTCTCTTCTCCCACCAGA AATTCCAATGCATCCCTTGCTAACAATGCAACTATAGTCAACTCCTTCAACCATCCGATCTTTGCAGCCTCCGCGCCTTCTAGTCCTACCAGGCGCCACC ACTACTTCCAACCCATACCCGAATGCGACGAATCTGATGGCTCCATTATCGATTCTGGCGGGTGGTTATCTTTCCAAGGTGTTCCTTCTTCCCAAACGAT CCCCGTTTCCCCTACTTTCAACCTCGTTAGACCCGTGGTGGGAGCGAATGTAAATGCTGCTGCGAGTGGAGTTGACAATGTGAGAAGCTCTGAGTTCGAG TTCGGGAATAGAAAGGTCAAGCCTTGGGAAGGTGAGCGGATACACGAGATGGGCACGGATGATCTCGAACTCACGCTTGCAAGCGGAAAGGCGCGGGGTT AG
AA sequence Show only first row Show all	>Lus10014326 pacid=23164716 polypeptide=Lus10014326 locus=Lus10014326.g ID=Lus10014326.BGIv1.0 annot-version=v1.0 MICSQGCKPLPGEIAGTPLSFSGGSSIQPSPQTSNFQSPVISYQASPTSSSFPSPSRFEANPSAYLLPLLRNIASIPTNLPPLRISNSAPVTPPLSSPTR NSNASLANNATIVNSFNHPIFAASAPSSPTRRHHYFQPIPECDESDGSIIDSGGWLSFQGVPSSQTIPVSPTFNLVRPVVGANVNAAASGVDNVRSSEFE FGNRKVKPWEGERIHEMGTDDLELTLASGKARG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	0	1
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	1.7	0.8672
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	4.9	0.8476
AT4G21970			Protein of unknown function, D...		Lus10020043 [exp]	4.9	0.8256
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	6.5	0.8419
AT5G64480			unknown protein		Lus10020488 [exp]	9.8	0.7957
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	15.7	0.8169
AT1G53800			unknown protein		Lus10037460 [exp]	17.5	0.7888
					Lus10035688 [exp]	17.7	0.8247
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	18.2	0.8014
AT1G75060			unknown protein		Lus10017506 [exp]	18.4	0.7953

Compare expression of checked genes

Lus10014326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.