Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75080 290 / 3e-97 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT1G19350 271 / 2e-89 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT3G50750 227 / 1e-73 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT4G36780 177 / 6e-54 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT4G18890 127 / 2e-34 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT1G78700 109 / 9e-28 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT5G45300 62 / 1e-10 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 53 / 1e-07 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026036 [exp] 440 / 1e-156 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014326 [exp] 350 / 2e-122 AT1G75080 207 / 7e-66 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 246 / 3e-80 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10007319 [exp] 128 / 2e-34 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1) Lus10029270 [exp] 127 / 5e-34 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10015238 [exp] 118 / 1e-30 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10010795 [exp] 117 / 1e-30 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10005419 [exp] 117 / 2e-30 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10035679 [exp] 64 / 3e-11 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126400 [exp] 321 / 1e-109 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.007G030700 [exp] 314 / 5e-107 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.014G041600 [exp] 263 / 7e-87 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 261 / 5e-86 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.011G106800 [exp] 124 / 5e-33 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 122 / 2e-32 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.003G026600 [exp] 121 / 5e-32 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.004G062400 [exp] 119 / 3e-31 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1) Potri.011G071800 [exp] 115 / 7e-30 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1) Potri.016G125700 [exp] 78 / 3e-17 AT1G19350 82 / 1e-18 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10014327 pacid=23164736 polypeptide=Lus10014327 locus=Lus10014327.g ID=Lus10014327.BGIv1.0 annot-version=v1.0 ATGGCGGGCGGCGGTGGTGGATCGTCGGGGAGACTACCGTCATGGAAGGAAAGAGAGAACAACATGAGAAGGGAGAGAAGGAGAAGAGCCATCGCTGCTA AGATTTACACCGGCCTCCGATCTCAGGGCAACTTCAAGCTCCCCAAACACTGCGACAACAACGAGGTCCTCAAAGCCCTCTGTGCCGAGGCTGGTTGGAT CGTTGAAGAAGACGGTACTACTTACCGCAAGGGGTGCAAGCCGCTGCCTGGTGAAATTGCAGGAACTCCACTAAGCTTTAGCGGAGGTTCATCCATTCAA CCAAGTCCACAATCTTCAAACTTCCAAAGTCCGGTGATTTCCTACCAAGCTAGCCCAACATCATCATCATTCCCAAGTCCTTCTCGTTTTGAAGCCAACC CATCAGCATACCTCCTTCCTTTACTCCGTAACATAGCTTCAATCCCCACAAACTTGCCTCCTCTTAGGATATCCAACAGTGCCCCAGTAACTCCTCCGCT CTCTTCTCCCACCAGAAATTCCAATGCATCCCTTGCTAACAATGCAACTATAGTCAACTCCTTCAACCATCCGATCTTTGCAGCCTCCGCGCCTTCTAGT CCTACCAGGCGCCACCACTACTTCCAACCCATACCCGAATGCGATGAATCTGATGGCTCCATTATCGATTCTGGCCGGTGGCTGTCTTTCCAAGGTGTTC CTTCTTCCCAAACGATCCCCGTTTCCCCTACTTTCAACCTCGTTAGACCCGTGGTGGGAGCGAATGTAAATGCTGCTGCGAGTGGAGTTGACAATGTGAG AAGCTCTGAGTTCGAGTTCGGGAATAGAAAGGTCAAGCCTTGGGAAGGTGAGCGGATACACGAGATGGGCACGGATGATCTCGAACTCACGCTTGCAAGC GGAAAGGCGCGGGGTTAG
AA sequence Show only first row Show all	>Lus10014327 pacid=23164736 polypeptide=Lus10014327 locus=Lus10014327.g ID=Lus10014327.BGIv1.0 annot-version=v1.0 MAGGGGGSSGRLPSWKERENNMRRERRRRAIAAKIYTGLRSQGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPLPGEIAGTPLSFSGGSSIQ PSPQSSNFQSPVISYQASPTSSSFPSPSRFEANPSAYLLPLLRNIASIPTNLPPLRISNSAPVTPPLSSPTRNSNASLANNATIVNSFNHPIFAASAPSS PTRRHHYFQPIPECDESDGSIIDSGRWLSFQGVPSSQTIPVSPTFNLVRPVVGANVNAAASGVDNVRSSEFEFGNRKVKPWEGERIHEMGTDDLELTLAS GKARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	0	1
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	1.7	0.8811
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	1.7	0.8672
AT1G75060			unknown protein		Lus10017506 [exp]	2.0	0.8740
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	6.0	0.8649
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	6.3	0.8559
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	7.5	0.8266
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	9.8	0.8415
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	11.4	0.8289
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	13.4	0.8242
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	15.2	0.8141

Compare expression of checked genes

Lus10014327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.