Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026037 [exp] 57 / 6e-10 AT4G36790 639 / 0.0 Major facilitator superfamily protein (.1) Lus10041712 [exp] 39 / 0.0007 AT4G36790 663 / 0.0 Major facilitator superfamily protein (.1) Lus10030370 [exp] 0 / 1 AT4G02425 142 / 2e-43 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014328 pacid=23164758 polypeptide=Lus10014328 locus=Lus10014328.g ID=Lus10014328.BGIv1.0 annot-version=v1.0 ATGATATCTGAAGTGGATCAATTTCCTCACCTTTCTACCTACACTCTGGCCAAGAAACCTTGCCGCTCCGGTCGCGCTACTTCCTTCCAAATCGACTCGA TCGACGTATTCGGCCTCTCTGCCTCATCGAAGACGACGGCAAGCCTATCCCCACGGTATCCTCGCCCGCAAGCAGCCCTGTCGCCGCGTGCCGGCTCTGG TCGTAGCTCTGACCGCAGCGCAATCGCCGCTGTTGCTCCGACTCAAATGCTATTAAAAAGAACTGCTTCTGCCCTCCCTCGATTCAACCTTGATTCTTCA GTCTTCCATAAGTTGGGCAGCCATGAATTGAGTTCCGTCATTGGTTTCCTTGTTTTTGTGTATGTGGTTGATCCGAGGAAACCAATGGCGGCTGGTGGTG GTGGTGTTGCACGCAACAGCAGAGTCATGCTAGGTAGGGAGAGTGCTAGGTTGGCCACTGCCAAAGAGTTGGAGATGGCTGATAAGCCTTAG
AA sequence Show only first row Show all	>Lus10014328 pacid=23164758 polypeptide=Lus10014328 locus=Lus10014328.g ID=Lus10014328.BGIv1.0 annot-version=v1.0 MISEVDQFPHLSTYTLAKKPCRSGRATSFQIDSIDVFGLSASSKTTASLSPRYPRPQAALSPRAGSGRSSDRSAIAAVAPTQMLLKRTASALPRFNLDSS VFHKLGSHELSSVIGFLVFVYVVDPRKPMAAGGGGVARNSRVMLGRESARLATAKELEMADKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014328 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	6.2	0.8439
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	12.2	0.8156
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	16.7	0.8138
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	18.7	0.8378
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	21.4	0.8174
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	21.8	0.8146
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	25.6	0.8122
AT1G76660			unknown protein		Lus10016050 [exp]	25.7	0.8085
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	29.2	0.8148
AT2G41990			unknown protein		Lus10003341 [exp]	32.8	0.7826

Compare expression of checked genes

Lus10014328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.