Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39910 643 / 0 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G22310 640 / 0 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT5G57990 129 / 2e-32 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 120 / 1e-29 UBP25 ubiquitin-specific protease 25 (.1) AT5G65450 119 / 2e-29 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 118 / 5e-29 UBP18 ubiquitin-specific protease 18 (.1) AT4G24560 118 / 8e-29 UBP16 ubiquitin-specific protease 16 (.1) AT2G24640 114 / 7e-28 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G17895 107 / 3e-25 UBP20 ubiquitin-specific protease 20 (.1) AT1G17110 103 / 8e-24 UBP15 ubiquitin-specific protease 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041705 [exp] 714 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 714 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10026041 [exp] 552 / 0 AT4G39910 481 / 8e-172 ubiquitin-specific protease 3 (.1) Lus10036607 [exp] 135 / 1e-34 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 134 / 2e-34 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10009273 [exp] 122 / 5e-30 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10032623 [exp] 121 / 1e-29 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10026918 [exp] 120 / 1e-29 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 120 / 2e-29 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093600 [exp] 704 / 0 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G074900 [exp] 700 / 0 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.006G185200 [exp] 144 / 7e-38 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G107500 [exp] 143 / 2e-37 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.011G112800 [exp] 123 / 8e-31 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 122 / 2e-30 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.003G092400 [exp] 121 / 8e-30 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.018G009500 [exp] 120 / 1e-29 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.005G156900 [exp] 120 / 2e-29 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.018G017000 [exp] 118 / 5e-29 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10014333 pacid=23164664 polypeptide=Lus10014333 locus=Lus10014333.g ID=Lus10014333.BGIv1.0 annot-version=v1.0 ATGGGGGCCGCTGGTTCGAAACTAGAGAAAGCTCTCGGCGATCAGTTCCCTGAAGGCGAGCGATACTTCGGCCTCGAGAATTTCGGCAACACTTGCTACT GTAACAGCGTCTTGCAGGCTCTGTACTTTTGCGTGTCATTTCGGGAACAATTGCTTGAATACTATGCAAATAATAAGTCCATTGGAGATGCAGAAGAGAA TCTCTTAACATGTTTGGCCGACTTATTTACACAGATAACCTCACAGAAGAAGAAAACTGGTGTCATAGCACCCAAGCGTTTTGTACAGAGGTTGAAAAAA CAAAATGAGCTTTTCCGTAGCTATATGCACCAGGATGCTCATGAATTCTTGAATTTTTTGCTTAATGAACTCGTTGACATACTGGAGAAAGAGGCCAAAG CTGTTAAAAGCAACGCAGAAACTTCACCTCCATCTGAAAAGACTGCAAATGGCCCAACCAGTGCTCTGCCAAATGGCATGTCAAAGGAGCCTTTAGTTAC TTGGGTGCACAAGAATTTCCAGGGAATACTTACGAATGAGACCAGATGTCTGCAGTGTGAAACGGTGACAGCTAGAGATGAGACGTTCTTCGACTTGAGC CTTGATATTGAACAGAACAGTTCCATAACCAGCTGTTTGAAAAATTTCAGTTCAACAGAAACGCTGAATGCAGATGATAAATTTTTCTGTGACAATTTAC AAGAAGCCCAAAAGAGAATGAAGATAAAGAAGCCTCCTCATATACTGGTCATCCATCTGAAGAGGTTTAAGTATATCGAGCAATTGGGGCGTTACAAGAA ATTATCTTATCGGGTGGTCTTCCCCCTCGAGCTGAAGCTAAGCAATACCATGGAAGATTCAGATATCGAATACTCGCTCTTTTCCGTGGTTGTGCATGTT GGCAGCGGGCCGAACCACGGGCACTACGTCAGTCTCGTGAAAAGCCACAGTCACTGGCTATTCTTTGACGACGAAAATGTCGAGATGATTGATGAGTCTG CTGTGCAAACATTCTTTGGCTCGCCGCAAGAATATTCTACTAACACCGATCACGGGTATATCTTGTTCTATGAGAGCATCACTGCTAACAAGAGCTGA
AA sequence Show only first row Show all	>Lus10014333 pacid=23164664 polypeptide=Lus10014333 locus=Lus10014333.g ID=Lus10014333.BGIv1.0 annot-version=v1.0 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVSFREQLLEYYANNKSIGDAEENLLTCLADLFTQITSQKKKTGVIAPKRFVQRLKK QNELFRSYMHQDAHEFLNFLLNELVDILEKEAKAVKSNAETSPPSEKTANGPTSALPNGMSKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLS LDIEQNSSITSCLKNFSSTETLNADDKFFCDNLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTMEDSDIEYSLFSVVVHV GSGPNHGHYVSLVKSHSHWLFFDDENVEMIDESAVQTFFGSPQEYSTNTDHGYILFYESITANKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	0	1
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	2.0	0.9063
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	6.3	0.9294
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	7.7	0.8977
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	8.8	0.9024
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	10.8	0.8984
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	11.2	0.8941
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	11.4	0.8947
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	12.2	0.8796
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	13.9	0.8801
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	14.1	0.8969

Compare expression of checked genes

Lus10014333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.