Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64970 494 / 4e-172 Mitochondrial substrate carrier family protein (.1) AT1G78180 423 / 2e-144 Mitochondrial substrate carrier family protein (.1) AT4G32400 159 / 2e-43 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT2G37890 149 / 3e-40 Mitochondrial substrate carrier family protein (.1) AT3G53940 147 / 3e-39 Mitochondrial substrate carrier family protein (.1) AT3G55640 146 / 3e-39 Mitochondrial substrate carrier family protein (.1) AT5G51050 144 / 3e-37 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 140 / 1e-36 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 130 / 1e-33 Mitochondrial substrate carrier family protein (.1) AT3G51870 128 / 3e-32 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026043 [exp] 788 / 0 AT5G64970 482 / 8e-169 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 160 / 7e-44 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 159 / 1e-43 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 153 / 5e-41 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 151 / 2e-40 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 146 / 3e-38 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 140 / 4e-36 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 139 / 2e-35 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032364 [exp] 135 / 7e-35 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093300 [exp] 553 / 0 AT5G64970 516 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.005G165200 [exp] 511 / 2e-178 AT5G64970 499 / 6e-176 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 157 / 1e-42 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 155 / 6e-42 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 147 / 3e-39 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G091900 [exp] 144 / 5e-38 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 141 / 3e-37 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 140 / 7e-37 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G197400 [exp] 135 / 5e-35 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 135 / 6e-35 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10014334 pacid=23164741 polypeptide=Lus10014334 locus=Lus10014334.g ID=Lus10014334.BGIv1.0 annot-version=v1.0 ATGATACTTATTTATTTTGTTTCCATTTTCCCTGGGCGTCGCATTTTATTTTATTTGCTCAGAGAGTCGCACCTACTTCCTCTCCTCCTCTCGCCCTCAC TTGCAGTTAAAACTCCAAAATCAATCTCCCGTCAATTCCCTAGCGGCGATGCGACCAAAGCCACCACCGCCTTCCGTCTTCCATTCCTCCGCCGGCAGCG GCATCTCCTAAGCCCGCTTTTCTGTCTCCGCCTCTCTCACTTTCACCAACTATTTCCTTACCATTCTCCTCTTCTCCTTCTTCACCGGAATAAAAATCCC CAATTTGCTCTTCCCGCTCATGGTGTTGCTCTCTTCTCAGCTTCTTCTCCCCTACAACACATCCCGGCCTCCGATTCCTTCTGGCACGGTGCAATGTACG GCGGCCAGGATCTAATTTTCCCGAATCTAATCAAGCTCCAATATTCTGATCTCTCTTCCTCCTCTTCTTCTTCTTCTTCCTCCTACCTCGTTGGGGGCAT CTTCCTCGACCACGATACCGTCTTTCCTTCCTTCTTTTCACTGAAACCTAACAAGTCTGATTCCTCTAACTTTTCGGGCCTTTCGAGGAATTTGAGGCTT CAAGTTGATGACCGCTGCCGGCGTCAGCAGCCGCGGCCGCGGCGTTTGAGGAGAAATGGAGTTGCGTTTCTCTCCGTTAGTTTGTCGATAAAACCAGGTG ATGAAGAGAAGAATTTGGAGGAGGAGGAAAGTGTTGGAACGTTTCTGAATACTGAATTTGAGAAAGGGAATAATAATAAGAAGAACAATGTCATTGCTGA GAGGAAACCGGGATCTGCGGCTTTCAATACCACTAAGCATCTCTGGGCGGGCGCAGTTGCCGCCATGGTTTCAAGAACCATAATAGCGCCTTTGGAGAGA TTGAAGCTGGAGTACATAGTATGTGGTGAGAAGAAGCATCTATTTGAACTCAGCAGGAAAATTTTCGAAACTCAAGGGGTCAAAGGTTTTTGGAAAGGGA ACTTGGTCAATATCCTTCGAACTGCTCCCTTTAAAGCTATCAACTTTTATGCGTATGACACATACAGAACGATGCTACTCAAGTGGACTGGGAATGAGGA AGCAACGAATCTAGAGAGGTTTGTTGCCGGCGCTGCAGCTGGTGTTACTGCTTCTTTGCTCTGCTTGCCTTTGGACACTATAAGGACGAAAATGGTGGCA CCTGGTGGCGATGCATTGGGTGGTGTAATAGGAACCTTCCGTCACATGGTCCAGTCTGAAGGGTTCTTATCACTTTATAAGGGCTTAGTCCCCTCATTAG CAAGTATGGCTCCTGCTGGTGCGGTGTTTTATGGGGTTTATGATATACTGAAAGCAGGCTATCTTCATTCACCTGAGGGGCTGGCAAGAATTCAAAACAT GAAACAAGAAGGGCAGGATTTGAATGCCTTTGACCAACTGGAGCTGGGTCCTGTCAGAACGCTGCTTTATGGAGCGATAGCTGGCTGTTGTTCTGAGGCT GCTACTTACCCATTTGAAGTTGTTAGGAGAAATCTTCAAATGCAAGTCCGAGCCACAAAGATGAACGCGGTAGCAACTTGTTTCAAGATAGTTGAACAAG GAGGGGTTCCTGCTCTCTATGTCGGATTAATACCAAGCTTGTTACAGGTCTTACCATCGGCTGCAATAAGTTACTTTGTGTACGAGTTCATGAAGATAGT ACTGAAAGTGGAGTCTTCTTCTTCTTCATAG
AA sequence Show only first row Show all	>Lus10014334 pacid=23164741 polypeptide=Lus10014334 locus=Lus10014334.g ID=Lus10014334.BGIv1.0 annot-version=v1.0 MILIYFVSIFPGRRILFYLLRESHLLPLLLSPSLAVKTPKSISRQFPSGDATKATTAFRLPFLRRQRHLLSPLFCLRLSHFHQLFPYHSPLLLLHRNKNP QFALPAHGVALFSASSPLQHIPASDSFWHGAMYGGQDLIFPNLIKLQYSDLSSSSSSSSSSYLVGGIFLDHDTVFPSFFSLKPNKSDSSNFSGLSRNLRL QVDDRCRRQQPRPRRLRRNGVAFLSVSLSIKPGDEEKNLEEEESVGTFLNTEFEKGNNNKKNNVIAERKPGSAAFNTTKHLWAGAVAAMVSRTIIAPLER LKLEYIVCGEKKHLFELSRKIFETQGVKGFWKGNLVNILRTAPFKAINFYAYDTYRTMLLKWTGNEEATNLERFVAGAAAGVTASLLCLPLDTIRTKMVA PGGDALGGVIGTFRHMVQSEGFLSLYKGLVPSLASMAPAGAVFYGVYDILKAGYLHSPEGLARIQNMKQEGQDLNAFDQLELGPVRTLLYGAIAGCCSEA ATYPFEVVRRNLQMQVRATKMNAVATCFKIVEQGGVPALYVGLIPSLLQVLPSAAISYFVYEFMKIVLKVESSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	0	1
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	1.0	0.8963
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	2.4	0.8934
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	3.0	0.8928
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	6.6	0.8731
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	8.9	0.8549
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	11.2	0.8566
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	12.3	0.8403
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	12.7	0.8692
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	12.7	0.8382
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	12.8	0.8701

Compare expression of checked genes

Lus10014334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.