Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26710 1070 / 0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT1G25350 224 / 1e-62 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) AT5G64050 59 / 1e-08 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026044 [exp] 1464 / 0 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10041433 [exp] 233 / 5e-66 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10034339 [exp] 235 / 2e-65 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10026608 [exp] 185 / 6e-55 AT5G26710 141 / 9e-40 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10022659 [exp] 61 / 2e-09 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10012512 [exp] 61 / 3e-09 AT5G64050 887 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10007148 [exp] 46 / 7e-05 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002537 [exp] 47 / 8e-05 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002536 [exp] 46 / 8e-05 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G001200 [exp] 1133 / 0 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 1131 / 0 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.008G122200 [exp] 229 / 1e-64 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122932 [exp] 114 / 6e-28 AT1G25350 500 / 1e-173 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.010G122866 [exp] 105 / 2e-24 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.009G169700 [exp] 61 / 2e-09 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Potri.019G077000 [exp] 47 / 4e-05 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2) Potri.003G004700 [exp] 44 / 0.0004 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03950 [flax] [poplar] tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain CL0039 [flax] [poplar] HUP PF00749 [flax] [poplar] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10014335 pacid=23164745 polypeptide=Lus10014335 locus=Lus10014335.g ID=Lus10014335.BGIv1.0 annot-version=v1.0 ATGGAGATAAAGCAGTTCTCCTTCCCTGCGGATTCAGTACCCTTAGCAGTGATTGCTGCTGCTAGGGTTTCCGGTTTCGAACTCCCCACTGAGGATCGCA AACCTTCTTCTCCTCCAACATTCGTCTTCTCCAACGGACTGGAATTACATGGCACAAATGTACTCCTTCGCCATGTTGCCCGAGTTGCGAGCTTGCCGAA TTTCTACGGCCGGAATGCTTATGAATCCAGCCAGATTGATGAGTGGCTGGAATATGCTCCGGTGCTTTCATCAGGGTCTGAGTTTGAGACTGCTTGCAAG TTCTTGGACAGTTATGCGTCCAAATCAACCTATTTGGTTGGTCATTCTCTGTCAATTGCTGACATTGTTATCTGGTCAGGCCTAGCAGCAACCGGGCCGA GATGGGAGAGTCTAAGGAAGTCAAAGAAGTACCAAAATCTAGTACGATGGTTCAACTCACTTTCTGCAGAGTATGGTGCTCTAGATGACGTTACTTCAAC TTATGTTGGGAAAAAAGGCCCCGGAAAGGCAGTGGCTTCCAAATCGAAGGAACAGGCTGTTAATGGGGATATTACTGGAAAGGGGAAAGCTGAAGTTGAC CTTCCGGATGCTGAGGTTGGAAAGGTTTGCTTGCGTTTTGCCCCAGAGCCCAGTGGGTTTCTTCATATCGGGCACTCCAAAGCCGCTCTGCTGAAACAGT ATTTTGCCCAGCGGTACAAAGGTCGTCTCATTATTCGATTTGATGACACCAATCCTTCTAAAGAAAGCAGTGAATTCGTGGACAATCTCCTCAAAGATAT TGAGACCCTTGGTATCAAATATGAGGCTGTTACTCATACTTCGGATTACTTCCCCGACTTGTTGGAAATGGCTGAAAAAATGATCAAAGAAGGCAAAGCT TATGTCGATGACACACCACAACAAAAGATGCGAGAAGAAAGGATGGACGGTATTGAATCAAAATTCCGAAACAACAGTGTAGAAGAGAATATGACATTGT GGAAGGAAATGATTGTGGCTTCTAAACGTGGACAGGAGTGTTGCCTTCGGGGAAAACTAGACATGCAAGATCCGAACAAGTCTCTTAGGGATCCAGTGTA TTATCGTTGCAATCCAGTTCCTCACCACCGCATTGGATCCAAGTACAAGTTGTACCCAACGTACGATTTTGCATGCCCATTTGTTGACGCCAAAGAAGGT ATAACTCATGCTCTCAGATCCAGCGAATACCATGATAGGAATGCTCAATATCACCGGATTCAGCAGGATATGGGGATGCGAAAGGTTCACATTTATGAGT TTAGCCGGCTGAACATGGTCTACACACTTCTGAGCAAACGCAACCTTCGTTGGTTTGTCGAAAATGGAAGAGTTGATGGTTGGGATGATCCCCGGTTTCC AACTGTACAGGGTATTGTCCGTAGGGGCCTGAAAATTGAGGCATTGCAGCAATTTATTCTTGAGCAGGGGGCTTCAAAGAACCTTAACCTGATGGAGTGG GACAAACTTTGGACGATTAATAAGAAGATAGTTGATCCAGTGTGCGCCAGGCACACTGCAGTTGTTGAAGAGAAGAGTGTCTTATTCACCCTCTCTAATG GCCCCGATGCACCATTTGTTCGGATCATACCTAGACACAAGAAATATGAGGGTGCTGGAGAGAAGGCGACAACATACACAAAGAGCATATGGATAGACCA GGCTGATGCCCAGAGTATATCAGTAAATGAAGAAGTAACCTTAATGGACTGGGGGAATGCTATTGTGCAGGAAGTTGTCAAGGATGAAACCGGAACTGTG AAACAATTGGTGGGTGTTCTACATCTAGAAGGCTCTGTGAAGACTACGAAGCTGAAGTTAACTTGGCTGCCTATGATAAATGAGTTGGTTAAGGTCTCCA TGGTTGAATATGACCATCTGATCACGAAGAAGAAGCTGGAGGACGGAGAGGAATTCAAAGATGTACTTAACCCCTGTACAAAGAAGGAGGTTGCTGTTCT TGGGGATTCAAACATGCGAAACTTGAAGCATGGCGAAGTAGTGCAGCTAGAGAGGAAGGGCTACTTCATATGTGATGTTCCTTTCATCAGACCTTCGAAA CCCATAGTTCTCATCGGAATTCCAGATGGCCGGAGCTCTTAA
AA sequence Show only first row Show all	>Lus10014335 pacid=23164745 polypeptide=Lus10014335 locus=Lus10014335.g ID=Lus10014335.BGIv1.0 annot-version=v1.0 MEIKQFSFPADSVPLAVIAAARVSGFELPTEDRKPSSPPTFVFSNGLELHGTNVLLRHVARVASLPNFYGRNAYESSQIDEWLEYAPVLSSGSEFETACK FLDSYASKSTYLVGHSLSIADIVIWSGLAATGPRWESLRKSKKYQNLVRWFNSLSAEYGALDDVTSTYVGKKGPGKAVASKSKEQAVNGDITGKGKAEVD LPDAEVGKVCLRFAPEPSGFLHIGHSKAALLKQYFAQRYKGRLIIRFDDTNPSKESSEFVDNLLKDIETLGIKYEAVTHTSDYFPDLLEMAEKMIKEGKA YVDDTPQQKMREERMDGIESKFRNNSVEENMTLWKEMIVASKRGQECCLRGKLDMQDPNKSLRDPVYYRCNPVPHHRIGSKYKLYPTYDFACPFVDAKEG ITHALRSSEYHDRNAQYHRIQQDMGMRKVHIYEFSRLNMVYTLLSKRNLRWFVENGRVDGWDDPRFPTVQGIVRRGLKIEALQQFILEQGASKNLNLMEW DKLWTINKKIVDPVCARHTAVVEEKSVLFTLSNGPDAPFVRIIPRHKKYEGAGEKATTYTKSIWIDQADAQSISVNEEVTLMDWGNAIVQEVVKDETGTV KQLVGVLHLEGSVKTTKLKLTWLPMINELVKVSMVEYDHLITKKKLEDGEEFKDVLNPCTKKEVAVLGDSNMRNLKHGEVVQLERKGYFICDVPFIRPSK PIVLIGIPDGRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	0	1
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	1.0	0.9634
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	3.2	0.8023
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10042221 [exp]	5.1	0.7495
AT1G09050			unknown protein		Lus10004495 [exp]	6.2	0.7934
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007202 [exp]	15.7	0.6831
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	24.0	0.7405
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10039016 [exp]	27.7	0.7381
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	32.0	0.7870
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	33.4	0.7317
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10039398 [exp]	34.5	0.7281

Compare expression of checked genes

Lus10014335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.