Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10260 377 / 4e-135 AtRABH1e RAB GTPase homolog H1E (.1) AT2G22290 367 / 4e-131 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT2G44610 352 / 2e-125 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G39890 312 / 2e-109 AtRABH1c RAB GTPase homolog H1C (.1) AT5G64990 294 / 2e-102 AtRABH1a RAB GTPase homolog H1A (.1.2) AT4G19640 141 / 4e-42 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 140 / 5e-42 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G54840 140 / 6e-42 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G17160 136 / 3e-40 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT4G17170 132 / 2e-38 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041702 [exp] 398 / 2e-143 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10024046 [exp] 398 / 2e-142 AT5G10260 405 / 3e-145 RAB GTPase homolog H1E (.1) Lus10019501 [exp] 352 / 4e-125 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 352 / 4e-125 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019502 [exp] 198 / 1e-65 AT2G44610 218 / 5e-74 Ras-related small GTP-binding family protein (.1) Lus10026045 [exp] 162 / 2e-51 AT5G10260 209 / 5e-70 RAB GTPase homolog H1E (.1) Lus10028820 [exp] 145 / 8e-44 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 146 / 3e-42 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10034903 [exp] 138 / 9e-41 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075300 [exp] 392 / 3e-141 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.002G135500 [exp] 360 / 2e-128 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 356 / 6e-127 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.001G147900 [exp] 258 / 5e-88 AT2G44610 298 / 2e-103 Ras-related small GTP-binding family protein (.1) Potri.012G117800 [exp] 141 / 2e-42 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.010G226300 [exp] 139 / 2e-41 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 139 / 3e-41 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.018G079300 [exp] 134 / 2e-39 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 133 / 3e-39 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.002G138400 [exp] 131 / 3e-38 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10014336 pacid=23164715 polypeptide=Lus10014336 locus=Lus10014336.g ID=Lus10014336.BGIv1.0 annot-version=v1.0 ATGGCGACGGTGTCCCCTCTCGCCAAGTACAAACTCGTATTCCTGGGCGATCAGTCGGTCGGCAAAACCAGCATCATCACCCGCTTCATGTACGATAAAT TTGACACCACATACCAGGCTACGATAGGGATTGATTTCTTGTCAAAAACAATGTATCTTGAAGATCGAACTGTTCGATTGCAACTTTGGGATACAGCAGG GCAAGAGAGATTTCGGAGTCTTATTCCTAGCTACATCCGGGATTCTTCTGTCGCTGTCGTAGTATATGATGTCGCTAATAGGCAGTCATTCTTGAATACT TCAAAGTGGATTGAAGAGGTACGTACGGAGCGAGGGAGCGATGTCATAATTGTCCTCGTCGGCAATAAGACAGATCTTGTTGAAAAAAGGCAAGTGTCGA TAGAGGAGGGAGACGGCAAGGCTAGAGACTTCGGAGTTATGTTCATTGAGACAAGTGCGAAAGCAGGATTCAACATCAAACCCCTTTTCCGGAAGATTGC TGCTGCCCTGCCAGGAATGGAAACTCTTTCTTCAACGAAACAGGAAGACATGGTAGATGTGAATCTGAAACCCACCGTGAATTCTTCGCAGGCCGAGCAG CAAGGGGGAGGCTGCGCTTGTTAG
AA sequence Show only first row Show all	>Lus10014336 pacid=23164715 polypeptide=Lus10014336 locus=Lus10014336.g ID=Lus10014336.BGIv1.0 annot-version=v1.0 MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNT SKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGDGKARDFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQ QGGGCAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10014336 [exp]	0	1
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10026045 [exp]	5.5	0.5955
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	7.3	0.6711
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	17.3	0.6689
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	31.4	0.6562
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	42.2	0.6479
AT2G46150			Late embryogenesis abundant (L...		Lus10032309 [exp]	47.3	0.6345
AT3G26000			Ribonuclease inhibitor (.1)		Lus10037060 [exp]	50.6	0.6353
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	50.6	0.6464
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	50.6	0.6437
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	58.4	0.5574

Compare expression of checked genes

Lus10014336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.