Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10250 619 / 0 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT5G64330 468 / 4e-156 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT1G30440 350 / 1e-111 Phototropic-responsive NPH3 family protein (.1) AT5G67385 344 / 7e-110 Phototropic-responsive NPH3 family protein (.1) AT1G03010 341 / 2e-108 Phototropic-responsive NPH3 family protein (.1) AT5G13600 330 / 1e-104 Phototropic-responsive NPH3 family protein (.1) AT5G03250 328 / 4e-104 Phototropic-responsive NPH3 family protein (.1) AT5G48800 321 / 6e-101 Phototropic-responsive NPH3 family protein (.1) AT2G14820 318 / 8e-100 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT3G50840 310 / 3e-97 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026046 [exp] 1219 / 0 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 371 / 7e-120 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 368 / 2e-118 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 337 / 6e-107 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 337 / 2e-106 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 335 / 5e-106 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 330 / 3e-104 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 328 / 1e-103 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 328 / 1e-103 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093000 [exp] 845 / 0 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 840 / 0 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 499 / 5e-169 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 498 / 7e-169 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.013G024400 [exp] 369 / 5e-120 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 363 / 2e-117 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 362 / 1e-116 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 361 / 3e-116 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 340 / 4e-108 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 336 / 9e-107 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10014337 pacid=23164722 polypeptide=Lus10014337 locus=Lus10014337.g ID=Lus10014337.BGIv1.0 annot-version=v1.0 ATGGGGGAATCTTTTGCTGCTGCTGGAAGGTGGTGGATTCAGCTCCCACCTCAAAAAGCCTTCTTCACTATCACAATGAGCAAGTCTATTCCTTTCTCCC TCCCTGTTCTTGAAAGCCAAAGCTCCTCTTCAACCGGCAGCGATTCAGACGGCCATCGCCAAGTTCCCCAGCAAAGCATCATCCTTCCTCCTAACAGCAC CATTGCTGCCGTAGCTGATGCCCTGGAGAAGAATGCTCATAATTGGCCTATAACTCCCCAACTCCCAACAGATCTATCGGTTCAAATCCAAGATGCTACT TTCACTGTTCACAAGTTACCTTTGGTGTCGAAATGCGGCTACATAGCACATTTGGAACTCCAGCCTTCAATTTCAAACTTCAGCTATGAAGTGAAGCTGG AAAACTTCCCAGGAGGATCAGAGACATTCGAAGCCGTCTTGAGATTCTGCTACGGCCTCCCTCTAGATTTAAACCCTCAGAACATAGCTCCACTAAGATG CGCATCAGAGTACCTGGAGATGAGTGAAGATCTTGAAGACGGAAATCTCATCACAAAGACAGAAGCTTTCCTTACATTCGTCATTCTCTCTTCATGGAAA GACACAATCACCATCCTTAAATCCTGCGAAACGTTATCCCCGTGGGCAGAGAATCTTCAAATCGTCAGAAGATGCTGCGACTCCATAACTTGGAAGGCTT CAAGAGAAAATGGTGCAGCTAGTGATCAAGATTCAGCATGGTGGCTGGATGATTTTGCCACCCTGCATATCAACCATTTCGCGAGGATTATAACAGCGAT AAAGGCAAAAGGAACGAAACCGGAAATCGTTGGAAAGTGTATAATGCGGCATGCATCGAAATGGTTGACCGGGGTGGATGAGGAACTAAGAGGCAATGGT GAGTTGCAGTTCAGTGTATTGTGTGGGAGAAAAAAGGAAGATGCGTATATTCGATATAAAGAGCAGCAAACGACGATTATCGAGAACCTAATAAGCTTAT TGCCACCTCAACAAGAAGCTGTGCCATGTAGGTTCTTATTGCAGATGTTGAATATGGCTAATGTTTATTCTGCATCGCAAGCTTTGATCACGCAGCTAGA GAAGAGAGTAGGGATTATACTAGACAAGGCAACTGTGAATGATCTTTTGATCCCTAATTACAAAACTACAGATCGAGGGAAGCTACTAAAGTCACCTGAG CAAAGCACGATGCATGATATAGACACAGTACAAAGAATTGTGGACTACTTTCTGATGCATGAACAGGATCAGCAGCAAATGCAATCAATACCAGGGAAAG CAAATGTTAGCAAGCTTCTGGACAATTATCTAGCTGAAATTGCCAAGGATCCAAATGTATCTGTGACCAAATTTCAGGTTTTGGCTGAAGCACTGCCGGA AAGTGCTAGAACTTGTCATGATGGTCTATACAGGGCCATTGACATCTATCTCAAGACTCATTTTTCGCTATCAGAACATGATCGGAAAAGGGTTTGCAGA TTAATGAACTGCGAGAAACTATCCCTAGATGCATGCATGCATGCAGCACAAAATGATAGGCTGCCAGTAAGAACTGTAATTCAGGTGTTGTTTACTGAGC AGGTGAAATTGAGGGCAGCAATGCAGATAAAAGATACACCAGGGAGTGGCAATATTTCGGAACAGGAGGTAGTACACCAAACAGAAACAAAATCAGAGAT CATGATGCTTAAAGCGGAGTTGGAGAATGTAAAGACAAGGATGGCAGAGCTGCAAAAAGACTACTTGGAACTGCAGCATGAGTATGCCAAGTTAAACAAC AAGCACAAACATACATTAGCTTGGGGTTGGAAGAAGATTAGGACATCCACTCTCTTCCACCGAAAAGCTGACGAGATTGAAATAGAAGAAGGAAGGCAAA GATCCAATTCCACAAGCCAAAAAGTCAAGTCCGGAAAAGTCACTTGGAACTGCAGCATGAGTATGCCAAGTTAA
AA sequence Show only first row Show all	>Lus10014337 pacid=23164722 polypeptide=Lus10014337 locus=Lus10014337.g ID=Lus10014337.BGIv1.0 annot-version=v1.0 MGESFAAAGRWWIQLPPQKAFFTITMSKSIPFSLPVLESQSSSSTGSDSDGHRQVPQQSIILPPNSTIAAVADALEKNAHNWPITPQLPTDLSVQIQDAT FTVHKLPLVSKCGYIAHLELQPSISNFSYEVKLENFPGGSETFEAVLRFCYGLPLDLNPQNIAPLRCASEYLEMSEDLEDGNLITKTEAFLTFVILSSWK DTITILKSCETLSPWAENLQIVRRCCDSITWKASRENGAASDQDSAWWLDDFATLHINHFARIITAIKAKGTKPEIVGKCIMRHASKWLTGVDEELRGNG ELQFSVLCGRKKEDAYIRYKEQQTTIIENLISLLPPQQEAVPCRFLLQMLNMANVYSASQALITQLEKRVGIILDKATVNDLLIPNYKTTDRGKLLKSPE QSTMHDIDTVQRIVDYFLMHEQDQQQMQSIPGKANVSKLLDNYLAEIAKDPNVSVTKFQVLAEALPESARTCHDGLYRAIDIYLKTHFSLSEHDRKRVCR LMNCEKLSLDACMHAAQNDRLPVRTVIQVLFTEQVKLRAAMQIKDTPGSGNISEQEVVHQTETKSEIMMLKAELENVKTRMAELQKDYLELQHEYAKLNN KHKHTLAWGWKKIRTSTLFHRKADEIEIEEGRQRSNSTSQKVKSGKVTWNCSMSMPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10014337 [exp]	0	1
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	5.1	0.9043
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	6.9	0.8475
AT2G17787			unknown protein		Lus10013567 [exp]	7.6	0.8774
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	9.8	0.8746
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	11.0	0.8749
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	13.1	0.8553
					Lus10004778 [exp]	13.2	0.8685
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	17.0	0.8584
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	17.9	0.8220
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	19.3	0.8482

Compare expression of checked genes

Lus10014337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.