Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29090 545 / 0 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G19730 273 / 8e-90 Pectin lyase-like superfamily protein (.1) AT2G21610 236 / 8e-76 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G47500 227 / 4e-72 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36700 222 / 2e-70 Pectin lyase-like superfamily protein (.1) AT2G36710 222 / 1e-69 Pectin lyase-like superfamily protein (.1) AT5G07430 216 / 1e-67 Pectin lyase-like superfamily protein (.1) AT5G07420 211 / 5e-66 Pectin lyase-like superfamily protein (.1) AT3G17060 209 / 3e-65 Pectin lyase-like superfamily protein (.1) AT1G69940 207 / 1e-64 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026047 [exp] 659 / 0 AT3G29090 548 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10041699 [exp] 604 / 0 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10024050 [exp] 310 / 5e-107 AT3G29090 258 / 4e-87 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10012942 [exp] 268 / 8e-88 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 263 / 1e-86 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 261 / 4e-86 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 263 / 9e-86 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 259 / 2e-84 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 240 / 2e-77 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128820 [exp] 598 / 0 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.018G068400 [exp] 281 / 6e-93 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G087300 [exp] 259 / 2e-86 AT3G29090 271 / 1e-91 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.007G015700 [exp] 262 / 1e-85 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 246 / 7e-80 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.014G117100 [exp] 240 / 5e-77 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 222 / 3e-70 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 222 / 2e-69 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 220 / 2e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 220 / 2e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10014338 pacid=23164767 polypeptide=Lus10014338 locus=Lus10014338.g ID=Lus10014338.BGIv1.0 annot-version=v1.0 ATGGCAGGACGAGTAATAACGGTTGCGCAGGATGGTTCCGGCGACTTCACCACAGTCCAGCAAGCAATAGACGCCGTCCCCTTGGGCAACAACTTCCGGA CTCTAATCCGCGTGTCCCCCGGAGTTTACAAGCAGCCAGTCTATGTTCCCAAGACCAAAAATTTCATTACTTTGGCTGGTTTGCGCCCGGAGGACACCTT CCTTACCTGGAACAACACCGCCACCAAAATCGATCATCACCAGGGAGCTAGGTTGATTGGGACTGGAACGTTTGGCTGCGGGAGTGTGATTGTTGAAGGA GAAGATTTCATTGCTGAGAATATCACTTTCGAGAACTCTGCTCCCCAGGGTTCTGGTCAAGCTGTGGCGCTGAGAGTGACAGCAGATCGTTGCGGTTTCT ATAATTGCAGGTTTCTGGGGTGGCAGGATACACTGTATTTGCACTATGGGAAACAGTATCTAAAGGATTGCTACATTGAAGGAAGCGTGGACTTCATTTT CGGGAATAGTACTGCTCTGCTCGAACATTGTCATATCCACTGTAAATCAGAAGGGTTTATAACTGCACAAGGCCGCAAGTCTTCTCAAGAGTCAACGGGC TATGTGTTCTTGAGATGTGTGATCACTGGAAACGGAAAAGCATCATACACGTATCTCGGGCGACCATGGGGGCCGTTTGGAAGGGTAGTTTTTGCATACA CTTATATGGATCATTGCGTCAGACATGTGGGGTGGAATAATTGGGGCAAATCAGAGAACGAAAGAAGTGCTTGCTTTTATGAGTACAGGTGCTATGGTCC AGGTAGTTGTCCATCGAAACGAGTCGGGTGGTGTAGAGAATTGATAGACGAAGAAGCAGACCAATTCGTCATGCACGGATTCATTGATCCAAACCCAGAA AGGCCATGGCTTGCCCAAAGAATGGCAGTGAGGATACCGCATTCTGCCTAG
AA sequence Show only first row Show all	>Lus10014338 pacid=23164767 polypeptide=Lus10014338 locus=Lus10014338.g ID=Lus10014338.BGIv1.0 annot-version=v1.0 MAGRVITVAQDGSGDFTTVQQAIDAVPLGNNFRTLIRVSPGVYKQPVYVPKTKNFITLAGLRPEDTFLTWNNTATKIDHHQGARLIGTGTFGCGSVIVEG EDFIAENITFENSAPQGSGQAVALRVTADRCGFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQGRKSSQESTG YVFLRCVITGNGKASYTYLGRPWGPFGRVVFAYTYMDHCVRHVGWNNWGKSENERSACFYEYRCYGPGSCPSKRVGWCRELIDEEADQFVMHGFIDPNPE RPWLAQRMAVRIPHSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	0	1
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	3.5	0.8172
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	6.7	0.7999
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	7.4	0.8417
AT4G13200			unknown protein		Lus10022803 [exp]	8.1	0.8044
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	10.7	0.7867
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	11.0	0.7904
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	11.4	0.7826
AT4G13200			unknown protein		Lus10011869 [exp]	12.2	0.8122
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	12.7	0.7825
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	15.5	0.8393

Compare expression of checked genes

Lus10014338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.