Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65030 59 / 3e-11 unknown protein AT5G10210 51 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026049 [exp] 184 / 8e-60 AT5G65030 129 / 3e-37 unknown protein Lus10026048 [exp] 164 / 4e-52 AT5G65030 129 / 3e-37 unknown protein Lus10014339 [exp] 155 / 2e-48 AT5G65030 135 / 7e-40 unknown protein Lus10041692 [exp] 113 / 5e-32 AT5G65030 118 / 4e-33 unknown protein Lus10041694 [exp] 111 / 3e-31 AT5G65030 122 / 2e-34 unknown protein Lus10041693 [exp] 111 / 3e-31 AT5G65030 122 / 2e-34 unknown protein Lus10024055 [exp] 108 / 8e-30 AT5G65030 124 / 2e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076100 [exp] 81 / 1e-19 AT5G65030 154 / 1e-47 unknown protein Potri.007G092300 [exp] 79 / 7e-19 AT5G65030 155 / 8e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014340 pacid=23164686 polypeptide=Lus10014340 locus=Lus10014340.g ID=Lus10014340.BGIv1.0 annot-version=v1.0 ATGGGTCCATCTTCCTCCTACGATCATCAACAACAAATCTCGTGCGGAATAGCGATCTACGAATCCAAGAACGTCGAGGAGTTGATGGTCATGAACAGGT ACTACAACAAGCCTCATGGCGACTTGTTTGTGAGATGCTATCTTTCAGCTGGAAACAACAACAACAACAACAACCACAAAATCCAGCTCCAGACTAGACA AGTTCCACCAACCAGTGCTGGTGATCATCATCTTTCTTGGATCGAGTCTTTCTCATTGGATTGCTTAGGCAACCAAGACTCCTTCAACAATCTCAAGACG AGTAGCGTGGTCTTCGAATTGAGATGGCTGAGACCATCCTCAATGCGAACCAACATCCTTGGAATGAGGGTTAAGAGTTCCGAAATCGATAGAGATCGAG ATGAAGGAGAATCATAA
AA sequence Show only first row Show all	>Lus10014340 pacid=23164686 polypeptide=Lus10014340 locus=Lus10014340.g ID=Lus10014340.BGIv1.0 annot-version=v1.0 MGPSSSYDHQQQISCGIAIYESKNVEELMVMNRYYNKPHGDLFVRCYLSAGNNNNNNNHKIQLQTRQVPPTSAGDHHLSWIESFSLDCLGNQDSFNNLKT SSVVFELRWLRPSSMRTNILGMRVKSSEIDRDRDEGES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65030			unknown protein		Lus10014340 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	1.0	0.9035
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	4.2	0.7766
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Lus10035016 [exp]	6.5	0.8299
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	7.2	0.8208
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	9.6	0.8267
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	11.0	0.7451
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10018119 [exp]	28.2	0.6471
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	29.6	0.7945
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	29.8	0.7737
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	30.4	0.6986

Compare expression of checked genes

Lus10014340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.