Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25270 302 / 2e-96 unknown protein AT2G12400 292 / 1e-92 unknown protein AT1G80540 260 / 2e-80 unknown protein AT1G71110 246 / 9e-75 unknown protein AT5G67550 69 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026050 [exp] 766 / 0 AT2G25270 328 / 4e-107 unknown protein Lus10001945 [exp] 326 / 3e-105 AT2G25270 650 / 0.0 unknown protein Lus10008813 [exp] 293 / 5e-93 AT2G12400 616 / 0.0 unknown protein Lus10008028 [exp] 293 / 6e-93 AT2G12400 641 / 0.0 unknown protein Lus10013492 [exp] 238 / 7e-72 AT1G71110 645 / 0.0 unknown protein Lus10001929 [exp] 215 / 6e-63 AT2G25270 457 / 3e-156 unknown protein Lus10007962 [exp] 211 / 7e-62 AT1G71110 578 / 0.0 unknown protein Lus10034641 [exp] 210 / 4e-61 AT1G71110 587 / 0.0 unknown protein Lus10038102 [exp] 152 / 2e-40 AT2G25270 468 / 5e-161 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120200 [exp] 317 / 7e-102 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 311 / 7e-100 AT2G12400 579 / 0.0 unknown protein Potri.018G023200 [exp] 309 / 5e-99 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 285 / 1e-89 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 233 / 6e-70 AT1G71110 646 / 0.0 unknown protein Potri.017G023400 [exp] 75 / 4e-14 AT5G67550 182 / 3e-51 unknown protein Potri.007G132601 [exp] 74 / 9e-14 AT5G67550 189 / 8e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014341 pacid=23164695 polypeptide=Lus10014341 locus=Lus10014341.g ID=Lus10014341.BGIv1.0 annot-version=v1.0 ATGAAACAAGAATACAAGGAGAGCAAACTTGGGATAACGAACGTAACGTTAGCGGCGGAGAGGAGAAGGCAGAGGGCGTTAGCGGCGGAGAGGACAAGGA GGAGGGACCCACTTGACGGATGCCGTTACTATACAGGTGGATGGAATTACAAAGACAAGCATTACTGGGCCTCAGTTGTGTTCGCCGCGTTGCCGTTGCT CGTCATTGCGGTGGTCTGGTTTCTGTCGTTAGGCGTCTTCCTTTGTTGTGCGTTTCTGCGGTGTTGTTGCAGTATATGTTGCGGCGGCCGCAAAAAGCGC CGCAACAACTCCGAGCTGGCCTACAATGTCTCCCTCGCCATCCTCCTCATCAGCTCCGTCGTAGCAATAACAGGGAGTATTGTCATATACGTAAACCAGC ACAAGTTCTACGACAAGGTGTGCGACGCGATGGAGTACATAATGAACATAGGACTCAACGTTTTCGAGAGGCTTAAGGTCGTAGTGAACTCGTTTGCGAA TGCGTTATCTCTGGCGTCAAACCAGCTCTCGTTGCCACCTGATATGCAGAATAGCATCAACAATGTCAACTCCATGATTACAACAATGGCTCGTCTCCCC GAGCTTCAATCTTCCTCCATGACCAGCGCCATCCATCACGTTCTTTTTCCCGCGAGGCTAGCACTGAACATAGTTGTGGGGATTGTTCTGGCATTTATAC TTCTTGGTCTTCTGTTCTCTCTTCTGGGCTTGCGACGTCTAGTCTACTTGTTTGCGATCTTAAGTTGGATAATCGTCGCACTATTGTTCATTCTGAGCGC CATTTTCCTCGTCTTTCGCATTGCGGTGTCAGACGCGTGCGTGGCGATGGAGGAATGGCTGCAGAACCCGACAACGAACTCAACAATGAACCAGGTTCTC CCATGTCTGAGCAGCTCGGTTGCCGACCAGACTTTGGCCGTCAGCAAACAAACCGTCTACTTCATGGTTAACTCCACCAACCAGTTCGACATGGCCATCG TCAATGGTATCCCCAACAACAACCTTAACCTTCATATGTCCTTTTCCTACAACCAATCTGGACCGTTGCTTCCTACCCTCTGTAACCCCATCAATCCTGA CATGACCTACCGAGCTTGCCAACCCGGTGAAGTCAACATTGCCAATGTCTCCCAGGAATTTGAGAAGTACAAGTGTGAAGCATCGGGGCAAGGAACATGC ATAACCCCAGGGAGGTTGACGCCGTACATATACGACCAATTGGTAGCAGTTGTGAACGTGAGCTACTCGCTATACAGCGCAGGGCCATTCCTGGTGGAAG TTGGTCAATGCTCCTTTGTGCTGAAAACGTTGACCGAGATCACCGAGTCTTACTGCCCAGCACTCAGGAGGTACAGCTGCAGAACGTTCGTGGGGCTGAC CATGATTTCTTGTTCTTCGTTGGTATGCTTGATCTGTTGGATATGTCATGTGAGGGCCAAACACGAGCTTTGGGAAGCTAAGAGATTCAAATCTATGTCG AATGGTCCTTTGAAACCCTGGTAA
AA sequence Show only first row Show all	>Lus10014341 pacid=23164695 polypeptide=Lus10014341 locus=Lus10014341.g ID=Lus10014341.BGIv1.0 annot-version=v1.0 MKQEYKESKLGITNVTLAAERRRQRALAAERTRRRDPLDGCRYYTGGWNYKDKHYWASVVFAALPLLVIAVVWFLSLGVFLCCAFLRCCCSICCGGRKKR RNNSELAYNVSLAILLISSVVAITGSIVIYVNQHKFYDKVCDAMEYIMNIGLNVFERLKVVVNSFANALSLASNQLSLPPDMQNSINNVNSMITTMARLP ELQSSSMTSAIHHVLFPARLALNIVVGIVLAFILLGLLFSLLGLRRLVYLFAILSWIIVALLFILSAIFLVFRIAVSDACVAMEEWLQNPTTNSTMNQVL PCLSSSVADQTLAVSKQTVYFMVNSTNQFDMAIVNGIPNNNLNLHMSFSYNQSGPLLPTLCNPINPDMTYRACQPGEVNIANVSQEFEKYKCEASGQGTC ITPGRLTPYIYDQLVAVVNVSYSLYSAGPFLVEVGQCSFVLKTLTEITESYCPALRRYSCRTFVGLTMISCSSLVCLICWICHVRAKHELWEAKRFKSMS NGPLKPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25270			unknown protein		Lus10014341 [exp]	0	1
					Lus10010582 [exp]	1.4	0.8882
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	4.4	0.8559
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	4.5	0.8255
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	5.7	0.8789
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	6.7	0.8729
					Lus10023352 [exp]	6.9	0.8789
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	8.0	0.8789
					Lus10026785 [exp]	8.9	0.8789
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	9.8	0.8789
					Lus10033874 [exp]	10.0	0.7668

Compare expression of checked genes

Lus10014341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.