Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69400 313 / 7e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G19590 218 / 2e-68 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 214 / 8e-67 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G80670 94 / 3e-21 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 52 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 46 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 42 / 0.0005 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026051 [exp] 589 / 0 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003954 [exp] 211 / 7e-66 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 204 / 1e-62 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026095 [exp] 101 / 6e-24 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 96 / 5e-22 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 47 / 2e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037500 [exp] 45 / 6e-05 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10006511 [exp] 45 / 6e-05 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10013452 [exp] 45 / 8e-05 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162700 [exp] 400 / 5e-140 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 389 / 1e-135 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G295100 [exp] 212 / 3e-66 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 211 / 8e-66 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G180000 [exp] 83 / 1e-17 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 81 / 9e-17 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G114600 [exp] 49 / 2e-06 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.010G255400 [exp] 47 / 1e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 47 / 2e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 44 / 0.0002 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014343 pacid=23164723 polypeptide=Lus10014343 locus=Lus10014343.g ID=Lus10014343.BGIv1.0 annot-version=v1.0 ATGAGTGGAAATTGCTTGAGGTTTGAAAACCCGATTGGTGATTCGGTCTCCAGGATCCGATTTGCTCCCTCCTCCAACAACCTCCTCATTTCTTCGTGGG ATTCTAATCTACGGCTGTACGATGTGGATAGCTCTAGAGTTAGACTTGAAGCTTCAGTAGGTTTTGGGCTTCTAGATTGTTGTTTTGGGAGCGAGTACGT CGCTTATTGTGCCGCTTCCGATGGTTGCATTAGAAGGTGTGACTTGAATTCCGGAATTTTCGATGCAATTGGTCGTCATGATGATGTAGCAATGTGTCTC GTCTACTCGGATGAAACCTGCCAAGTAATATCATCTGGCTGGGACAGGAAGATGGTGGCATGGGATATACGCTCACCAAACAGTGCGTTCTGCTCCAGAG ATATGGATGCAGAAGTGGAGGCCATGTCCCTGTCTGGATATAGCTTAACTGTTGCCTTAGGAGGGTCGATAACCACGTACGACTTGCGTTATATGGAGCG ACCAGCTAGTCTAGCGAACTCGCGTTTCGATGTGAGGATAAGATCAATCTGTTCTGTGCCTTATTGTAGAGGATATGCAGCTGGTTCAGTAGATGGAATA GTGGCGCTTGAGATATCTAATTCAACAACTTCGGAAGGCACACGCTATGCTTTCCGCTGTCATCCAAAATCATCAGACGGGAAGAAACATCTAATAGCTG TCAATGACGTGCAATTCAACCCAGTAATCTTTGGTGCTTTTGTTACTGGTGACAATCAAGGAAATGTCATTGCATGGGATGCTCAAAGCAAAAGAAGGCT ACACGAGTTTCCAAGATACCCAACAAGTATCGCGTCCTTGTCGTACAATCATGATGGGGAATTGCTGGCTGTCGCATCAAGCCATACCTACCAAGAAGCC GCTGAAACGTTCATAAAGGAAACATTGTGTAAGTTATCTTTCTCCTGCCAAGGTTATGTTGATTCTGCTGCATTTGTTACGACCACGAAACAAGAGTGCT CTCCGTACCGTTATGACATTCCGACCATTGGACCTTGA
AA sequence Show only first row Show all	>Lus10014343 pacid=23164723 polypeptide=Lus10014343 locus=Lus10014343.g ID=Lus10014343.BGIv1.0 annot-version=v1.0 MSGNCLRFENPIGDSVSRIRFAPSSNNLLISSWDSNLRLYDVDSSRVRLEASVGFGLLDCCFGSEYVAYCAASDGCIRRCDLNSGIFDAIGRHDDVAMCL VYSDETCQVISSGWDRKMVAWDIRSPNSAFCSRDMDAEVEAMSLSGYSLTVALGGSITTYDLRYMERPASLANSRFDVRIRSICSVPYCRGYAAGSVDGI VALEISNSTTSEGTRYAFRCHPKSSDGKKHLIAVNDVQFNPVIFGAFVTGDNQGNVIAWDAQSKRRLHEFPRYPTSIASLSYNHDGELLAVASSHTYQEA AETFIKETLCKLSFSCQGYVDSAAFVTTTKQECSPYRYDIPTIGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69400			Transducin/WD40 repeat-like su...		Lus10014343 [exp]	0	1
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	1.4	0.9338
AT1G75150			unknown protein		Lus10010814 [exp]	4.7	0.9216
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	6.7	0.9180
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	11.2	0.8931
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	11.2	0.9040
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	12.8	0.9074
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	15.3	0.9015
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	15.9	0.8809
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	18.8	0.8994
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	20.5	0.8915

Compare expression of checked genes

Lus10014343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.