Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31130 259 / 7e-89 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026052 [exp] 345 / 1e-122 AT4G31130 287 / 6e-100 Protein of unknown function (DUF1218) (.1) Lus10030037 [exp] 145 / 5e-45 AT4G31130 134 / 2e-41 Protein of unknown function (DUF1218) (.1) Lus10004839 [exp] 45 / 1e-05 ND 44 / 1e-05 Lus10030038 [exp] 0 / 1 AT4G31130 107 / 7e-31 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G000600 [exp] 251 / 1e-85 AT4G31130 277 / 4e-96 Protein of unknown function (DUF1218) (.1) Potri.006G280900 [exp] 249 / 6e-85 AT4G31130 253 / 2e-86 Protein of unknown function (DUF1218) (.1) Potri.007G002900 [exp] 187 / 3e-60 AT4G31130 179 / 4e-57 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10014344 pacid=23164667 polypeptide=Lus10014344 locus=Lus10014344.g ID=Lus10014344.BGIv1.0 annot-version=v1.0 ATGGCGGTGACGATGAAGCTCATGTCCCTAGCAGTGGCCGCTCTCGGTGTCCTCTCTTTCATCTTCGGCGTCGTCGCCGAGAACAAGAAGCCGGCTGCTG GAACTCCGATTACCGGTAAGGGTGTGGTGATCTGCAAGTATCCGGCGGATCCGACGGTGGTGTTAGGTTACTTATCGGTTGCGTTTCTGGTAGCGGCGTC GGCGGTAGGATATTACGCCCTGTTTTATCCTTACAAGGGGAAGTCGGTCCCACAGTCGGCCATGTTCCGTAGCACCAGTTTCCTTGTTTTCTTCAACATC GCGCTATTCACTGGTGGATTAGGTGCAGCGTTGCTGTTGTGGCCAACAATCACTGAGCAGATGCACTTGTCTGGCAATGTTCATCACAATCTGGAGACTC AATGCCCAACTGCCAAGACTGGTCTGCTAGGAGGTGGTGCCTTTGTTTCGCTAGACTCGGCTCTGTTCTGGTTGGTTGCACTCATGTTGGCCAGCAATGC CCGAGAAGACTACTTTGACGAAGTTGAGAACAACGGCAAGGTAGCCGGAGAAGCTAACCTTGGTTCTGTTAACTACGACGATCCTGCAGCGCTGAAGGCC TAG
AA sequence Show only first row Show all	>Lus10014344 pacid=23164667 polypeptide=Lus10014344 locus=Lus10014344.g ID=Lus10014344.BGIv1.0 annot-version=v1.0 MAVTMKLMSLAVAALGVLSFIFGVVAENKKPAAGTPITGKGVVICKYPADPTVVLGYLSVAFLVAASAVGYYALFYPYKGKSVPQSAMFRSTSFLVFFNI ALFTGGLGAALLLWPTITEQMHLSGNVHHNLETQCPTAKTGLLGGGAFVSLDSALFWLVALMLASNAREDYFDEVENNGKVAGEANLGSVNYDDPAALKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	0	1
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	1.4	0.9223
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	4.9	0.9147
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	5.1	0.9222
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10021960 [exp]	7.7	0.8731
AT5G11680			unknown protein		Lus10027000 [exp]	12.0	0.9001
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	12.6	0.9078
AT1G67623			F-box family protein (.1)		Lus10037978 [exp]	13.3	0.8936
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	13.4	0.9113
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	14.3	0.9137
AT5G11680			unknown protein		Lus10020200 [exp]	15.1	0.9170

Compare expression of checked genes

Lus10014344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.