Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 327 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G20060 305 / 5e-105 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52695 164 / 5e-50 alpha/beta-Hydrolases superfamily protein (.1) AT1G52460 126 / 3e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 117 / 3e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 115 / 5e-31 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G51300 108 / 6e-29 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 85 / 1e-20 alpha/beta-Hydrolases superfamily protein (.1) AT4G22300 85 / 3e-19 SOBER1 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026054 [exp] 520 / 0 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10008078 [exp] 322 / 8e-112 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10019438 [exp] 301 / 2e-103 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 295 / 2e-100 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10002034 [exp] 191 / 8e-59 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173700 [exp] 360 / 1e-126 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 357 / 1e-125 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G030200 [exp] 324 / 2e-112 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 322 / 8e-112 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G070700 [exp] 303 / 3e-104 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.011G023000 [exp] 88 / 2e-20 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.004G001701 [exp] 39 / 0.001 AT4G22300 199 / 9e-65 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02230 [flax] [poplar] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Lus10014347 pacid=23164707 polypeptide=Lus10014347 locus=Lus10014347.g ID=Lus10014347.BGIv1.0 annot-version=v1.0 ATGAGCTACCAGCAGCAATTTCATATGGCATCAGGGAGTACAAGCGGGAGACGATCTGCAGTCGGATTCGGAAGGACTCATGTGGTGAGGCCAAGAGGTC AGCACCAGGCTACTATTGTTTGGCTCCACGGCATGGGTGACAATGGCTCCAGCTGGTTGCAGGTCCTCGAAGCACTGTCTATGCCTAATATCAAATGGAT ATGCCCAACAGCACCTAGCCGACCTGTGAGAATGCTGGGTGGATATCGTTGCACAGCATGGTTTGATGTTGAGGAGATGTCGGAAGATACCATGGAAGAC ATTGACGGCTTAGATGCTTCAGCTGCCCATATCGCCAACTTGTTGTCCAGTGAGCCATCCGACGTGAAAGTGGGAATCGGAGGGTTCAGTATGGGTGGTG CAATCGCACTTTACTCGGCAACTTGTGCTGTCCTTGGCCGATATGGAAATGCAGATATTCCTTACACCATCAACCCCACTGCTATCCTCAGTCTCAGCGG CTGGCTTCCTTCTGGCTCAAGGAACCTGCGCAACAAAATACAAGGGTCCCATGATGCTGCAAGGCGTGCTGCATGGCTCCCCATTTTGGTTACCCACGGC ACAATTGACGACCAAGTTCCTTACAGTTACGGAGAAAAGTCTGCACGCTGGTTATGTAACGCTGGATTCGGGCGACTTACGTTCAAGCGTTACGATGGGA TGGGGCATTACACAGTCCCAAAGGAAATGGAAGAGGTGAAGAGCTGGATAGCAGCATGCTTTGGTCTACCAACGTATGGATGA
AA sequence Show only first row Show all	>Lus10014347 pacid=23164707 polypeptide=Lus10014347 locus=Lus10014347.g ID=Lus10014347.BGIv1.0 annot-version=v1.0 MSYQQQFHMASGSTSGRRSAVGFGRTHVVRPRGQHQATIVWLHGMGDNGSSWLQVLEALSMPNIKWICPTAPSRPVRMLGGYRCTAWFDVEEMSEDTMED IDGLDASAAHIANLLSSEPSDVKVGIGGFSMGGAIALYSATCAVLGRYGNADIPYTINPTAILSLSGWLPSGSRNLRNKIQGSHDAARRAAWLPILVTHG TIDDQVPYSYGEKSARWLCNAGFGRLTFKRYDGMGHYTVPKEMEEVKSWIAACFGLPTYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	2.8	0.9242
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10003819 [exp]	3.5	0.8708
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	4.2	0.8962
					Lus10013331 [exp]	5.2	0.8653
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	7.3	0.8922
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	8.7	0.8813
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	9.2	0.8420
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015283 [exp]	11.8	0.7580
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	13.4	0.8546
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10040694 [exp]	14.5	0.8673

Compare expression of checked genes

Lus10014347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.