Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13440 1028 / 0 glucose-inhibited division family A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026055 [exp] 796 / 0 AT2G13440 732 / 0.0 glucose-inhibited division family A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066300 [exp] 1083 / 0 AT2G13440 1058 / 0.0 glucose-inhibited division family A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01134 [flax] [poplar] GIDA Glucose inhibited division protein A
Representative CDS sequence Show only first row Show all	>Lus10014348 pacid=23164705 polypeptide=Lus10014348 locus=Lus10014348.g ID=Lus10014348.BGIv1.0 annot-version=v1.0 ATGGCCGCCATGGCGACGGCGACGGCAGCGGCGGCTCTCCATTTATCTCGCTTACGCATTCGGCGGTCCCATTCCGCTTTGTTATCTTCTTGTCTTATCC CTTCTCCTTCTGCTCTTCTATTCTCTACTTGTCCCTCTTTCCCCCGCAAGTATCCTCGCCTCTCCTTCAGCCTTGGCCGCACTCGCACCACCTCCTTCCG CCGCTTCTCTGCTCTAGCTTCTTCTTCCTCTCCTGAATTGAGTGGCTGTGCTGAAGAAACCGGTGAAAGATATGATGTAATTGTGGTTGGCGGAGGACAT GCAGGCTGTGAGGCAGCTCTTGCTTCTGCTCGCTTAGGGGCTAAAACTCTACTTCTCACCTTAAACTTAGATCGCATAGCATGGCAGCCTTGCAATCCAG CAGTAGGAGGACCTGCAAAGTCACAGCTGGTTCATGAAGTCGATGCACTTGGCGGTGAAATTGGAAAAATTGCTGATAGGTGCTATTTACAGAAGCGAAT TCTCAATCTCTCAAGGGGTCCTGCTGTTCGTGCTTTGCGAGCGCAAACTGACAAAAGAGAATATGCTATGCGAATGAAACAAATAGTGGACAGGCAAGTT GACAAAATGTGGTTTCTGTTGGGAATGTGGTTATCTTCTAAGAACCGAGATTTGTTCATTTTCAGCACTCCAAACCTTTCCATCAGAGAGGCAATGGTAA CAGATATCTTACTGGGAAAGAATGACAATGTGGAAGGTGTATGCACCTTTTTTGGGATGAATTTCTATGCTGCTTCTGTTGTTCTTACAACAGGGACTTT TATGAGTGGTAAAATTTGGGTTGGAAGAACATCTATGCCTGCTGGAAGAGCTGGAGAGTCTGCTTCAGAAGGAATCACTGAGAACTTACAACGCATTGGA TTTGAAACGGAGCGTTTAAAAACTGGAACCCCTGCACGCGTGGACATCAGAACTGTTGACTTTTCTGGATTGGAACCGCAACGCGGAGATGAAGAGGTCA GCTGGTTTAGTTTTGATCCTGATGTGCATGTTGAGAGGGAGCAGATGTGTTGCTACCTAACACGCACAACAAAATTAACCCACCAGATTATCAAGGATAA CTTGCACGAAACTCCGACTTATGGAGGCTGGGTTGAAGCAAAGGGGCCTAGATACTGTCCTTCTATCGAGGATAAGATAGTAAGATTTGAAGGTAAAGAG TCGCATCAGATTTTCCTTGAACCAGAGGGTCGAGATGTGCCTGAGTTGTACGTACAGGGATTTTCAACTGGGTTACCGGAGAGACTTCAGTTACCACTCT TGAGAACCTTGCCTGGACTTGAAAACTGTTCAATGTTAAGGCCTGCATATGCTGTTGAGTATGACTTCCTACCCGCACATCAATGTACTAGGTCTCTTAT GACAAAGAAAGTGGACGGACTTTTCTTCTCTGGTCAGATAAATGGAACAACGGGCTATGAAGAGGCTGCAGCTCAGGGAATTATTTCTGGAATCAATGCT GCAAGACATTCATGTGGTAAACCCCTCATTGTTCTTGAGAGGGAAAGCAGTTATATTGGCACATTGATTGATGATCTGATCACAAAGGATCTACGAGAGC CTTACCGCATGTTGACGAGTCGCTCGGAGCATCGATTACTTCTACGATCTGATAATGCTGATAGTCGTCTCACACCTTTGGGGCGTGAAATCGGGTTGAT AGATGATAGACGATGGGGACTTTACCAGGAGAAACAAGCACGCATATGTCAAGAAAAGGAACGTCTGAAATCAGTCAGGATATCAGGAGGAGATTTGGCT GCTGATGTCACCCGTATATCTGGGCAACCCGTAAAGGATTTCACAACTCTGGAGAGCCTTCTAAAGAAGCCCCATATCCAATATGAAGTACTTGACAATC ATGGGTTCGGGAATACCGCCTTGTCCCGGGAGGAGAAAGAATGTGTAGAGATTGATGTGAAGTATGAGGGTTTCATTGTACGTCAACGAATTCAACTGCA GCAGATGGCTCGTCAACAAAACAGACCAATACCTGAGAACATAGATTACTATGCAATGACAACTTTGTCCAATGAGTCTCGCGAAAAGCTCTCCAAGGTC AGACCACAAACAATTGGACAAGCGAGCAGAGTTGGTGGGGTGAGCCCCGCAGATATCACTGCGCTTCTCATCATCCTCGAATCGAACAGGCGGAAAGCTC AAGACCTGAAGAGGCATCACATGCTTGTTTCCGTCGTCACAGAAGCCAACTTGGAGCCTCACGTACCAGCTGCGGAGCCAATCATTTCATGA
AA sequence Show only first row Show all	>Lus10014348 pacid=23164705 polypeptide=Lus10014348 locus=Lus10014348.g ID=Lus10014348.BGIv1.0 annot-version=v1.0 MAAMATATAAAALHLSRLRIRRSHSALLSSCLIPSPSALLFSTCPSFPRKYPRLSFSLGRTRTTSFRRFSALASSSSPELSGCAEETGERYDVIVVGGGH AGCEAALASARLGAKTLLLTLNLDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKIADRCYLQKRILNLSRGPAVRALRAQTDKREYAMRMKQIVDRQV DKMWFLLGMWLSSKNRDLFIFSTPNLSIREAMVTDILLGKNDNVEGVCTFFGMNFYAASVVLTTGTFMSGKIWVGRTSMPAGRAGESASEGITENLQRIG FETERLKTGTPARVDIRTVDFSGLEPQRGDEEVSWFSFDPDVHVEREQMCCYLTRTTKLTHQIIKDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFEGKE SHQIFLEPEGRDVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCTRSLMTKKVDGLFFSGQINGTTGYEEAAAQGIISGINA ARHSCGKPLIVLERESSYIGTLIDDLITKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWGLYQEKQARICQEKERLKSVRISGGDLA ADVTRISGQPVKDFTTLESLLKKPHIQYEVLDNHGFGNTALSREEKECVEIDVKYEGFIVRQRIQLQQMARQQNRPIPENIDYYAMTTLSNESREKLSKV RPQTIGQASRVGGVSPADITALLIILESNRRKAQDLKRHHMLVSVVTEANLEPHVPAAEPIIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	2.2	0.9329
AT1G73020			unknown protein		Lus10000526 [exp]	2.2	0.9139
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	2.8	0.9308
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10015847 [exp]	3.3	0.9038
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	4.6	0.9256
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	4.6	0.9091
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	4.8	0.8875
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	4.9	0.8835
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	6.6	0.8875
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029134 [exp]	6.9	0.9030

Compare expression of checked genes

Lus10014348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.