Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15880 214 / 7e-72 ATGOS11, GOS11 golgi snare 11 (.1) AT2G45200 110 / 2e-30 ATGOS12, GOS12 golgi snare 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026058 [exp] 269 / 1e-93 AT1G15880 288 / 4e-100 golgi snare 11 (.1) Lus10001986 [exp] 109 / 4e-30 AT2G45200 437 / 5e-158 golgi snare 12 (.1.2) Lus10009285 [exp] 106 / 4e-29 AT2G45200 444 / 2e-160 golgi snare 12 (.1.2) Lus10030294 [exp] 71 / 2e-15 AT2G45200 297 / 2e-102 golgi snare 12 (.1.2) Lus10015880 [exp] 60 / 3e-12 AT2G45200 151 / 3e-47 golgi snare 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180800 [exp] 225 / 5e-76 AT1G15880 365 / 4e-130 golgi snare 11 (.1) Potri.001G047100 [exp] 223 / 2e-75 AT1G15880 369 / 2e-131 golgi snare 11 (.1) Potri.002G145200 [exp] 103 / 6e-28 AT2G45200 365 / 3e-129 golgi snare 12 (.1.2) Potri.014G066800 [exp] 100 / 1e-26 AT2G45200 372 / 3e-132 golgi snare 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10014349 pacid=23164669 polypeptide=Lus10014349 locus=Lus10014349.g ID=Lus10014349.BGIv1.0 annot-version=v1.0 ATGGATGCGCCGACCTCATGGGACGCCTTGCGCAAACAGGAGTTTCATCGTCTCCGCTCTAGTCTTCGAGCTAAGCAAGAACATGCCTCACTTATTGAGG ACTTCAGAGAATTTGATCGAACAAGACTAGACTTAGAAGAAGGCGCTGACTCATCGGGACAAGCTCTACTCAGAGAGCATGCAACCATCAACAGGAGTAC TGGACAGGTAGATGTTGTAATTTCTCAAGCTCAGGCAACCCTTGGTGCCCTGGGTTTTCAACGTTCGACATTTGGGGGAATCAATTCAAAGCTCACAAAT GTTAGCAGCCGCCTCCCTATGGTGAATAGCATTCTTAGTTCAATAAAGAGGAAGAAGTCGATGGATACCTTAATTCTGTCTCTGGTTGCATCAGTATGCA CCTTTCTTATATTCGTTTACTGGCTGACAAAGTAA
AA sequence Show only first row Show all	>Lus10014349 pacid=23164669 polypeptide=Lus10014349 locus=Lus10014349.g ID=Lus10014349.BGIv1.0 annot-version=v1.0 MDAPTSWDALRKQEFHRLRSSLRAKQEHASLIEDFREFDRTRLDLEEGADSSGQALLREHATINRSTGQVDVVISQAQATLGALGFQRSTFGGINSKLTN VSSRLPMVNSILSSIKRKKSMDTLILSLVASVCTFLIFVYWLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	0	1
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	1.4	0.9497
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	2.0	0.9081
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	2.4	0.9321
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10041069 [exp]	5.7	0.8746
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	5.7	0.9135
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	11.2	0.8886
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	11.5	0.8679
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	14.1	0.8545
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	14.4	0.8660
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	14.9	0.8828

Compare expression of checked genes

Lus10014349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.