Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80730 84 / 2e-19 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G66140 78 / 3e-17 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G10970 78 / 5e-17 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 76 / 9e-17 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G57520 73 / 4e-16 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT5G25160 74 / 1e-15 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G14010 64 / 1e-12 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 61 / 2e-11 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G01860 60 / 1e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 59 / 3e-10 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026059 [exp] 106 / 3e-29 ND 39 / 2e-04 Lus10013243 [exp] 83 / 2e-18 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 81 / 8e-18 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10028997 [exp] 77 / 4e-17 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10003681 [exp] 77 / 9e-17 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10025471 [exp] 72 / 1e-15 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10006960 [exp] 71 / 4e-15 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10026597 [exp] 70 / 1e-14 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10018328 [exp] 68 / 7e-14 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047500 [exp] 95 / 3e-23 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 94 / 1e-22 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 86 / 1e-19 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G261700 [exp] 84 / 5e-19 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G134800 [exp] 80 / 1e-17 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.004G084100 [exp] 79 / 2e-17 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.010G102700 [exp] 78 / 3e-17 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.008G138000 [exp] 77 / 7e-17 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.006G169800 [exp] 72 / 1e-15 AT5G57520 94 / 7e-25 zinc finger protein 2 (.1) Potri.018G094300 [exp] 71 / 6e-15 AT5G57520 108 / 9e-31 zinc finger protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014350 pacid=23164763 polypeptide=Lus10014350 locus=Lus10014350.g ID=Lus10014350.BGIv1.0 annot-version=v1.0 ATGGATACCAAACAGTATCACGATGAAGAAGATTCCCATGATCCGCCGCTGAATCTCATCGATTCCTTGGACGTCGGCTCATCCTCCTCCTCGTCATCCT CCTCCGACATGATCACGATGATGACGGCGGCGGCTTCGGCTCATCCTAATAATCCTACTCCACCCGCAGGGGATCAGGAACCCACGAGGGTATTCTCCTG CAATTACTGCCAGAGGAAATTCTACAGCTCCCAGGCTTTGGGCGGCCACCAGAACGCTCACAAAAGGGAGCGCACCATCGCCAAACGCGCCGGCAGCGGC GGCGCCCACCACTTCATGAGGGCTTCTTCGTCTTTTCACTTCTCCTCCAGCATTTCCTCCCTTCCCTTGCACGGTTCGCCGCTTGGAATTCAGGCCCATT CCTTGATCCACAAGCCCCGGAGGCAGCAGCCCAACATTATTAGTATCGCCGACCACCAGCGTCCCGCCGTCGGCCGGCTGGCGGCGGAATATAATTTCCA CCTAGGATCCTCGACGACGACGTCCTCTGGAAGGTTTGATGCTGGCTGGAGGTTATCTCCGGCGGCGGATGAGATTATGATGATGCACCACGGCGGCGGC GGTGGGTTTTGGTGGAGTGGTGGCGGCAGCGGTGGAGACGGCGGTGGTGTTCGTTCCAAACAAGATGATTTGCACAAGCTTGATCTCTCACTTAAGCTGT GA
AA sequence Show only first row Show all	>Lus10014350 pacid=23164763 polypeptide=Lus10014350 locus=Lus10014350.g ID=Lus10014350.BGIv1.0 annot-version=v1.0 MDTKQYHDEEDSHDPPLNLIDSLDVGSSSSSSSSSDMITMMTAAASAHPNNPTPPAGDQEPTRVFSCNYCQRKFYSSQALGGHQNAHKRERTIAKRAGSG GAHHFMRASSSFHFSSSISSLPLHGSPLGIQAHSLIHKPRRQQPNIISIADHQRPAVGRLAAEYNFHLGSSTTTSSGRFDAGWRLSPAADEIMMMHHGGG GGFWWSGGGSGGDGGGVRSKQDDLHKLDLSLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	0	1
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	1.4	0.9766
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10038050 [exp]	3.5	0.9594
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	5.3	0.9650
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	7.9	0.9368
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	8.1	0.9598
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	8.7	0.9598
AT3G56200			Transmembrane amino acid trans...		Lus10042864 [exp]	9.8	0.9459
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	10.4	0.9640
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	11.9	0.9243
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	12.0	0.9499

Compare expression of checked genes

Lus10014350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.