Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80920 125 / 3e-37 AtToc12, AtJ8, J8 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) AT5G59610 59 / 5e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G72070 57 / 8e-11 Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 54 / 7e-09 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT5G16650 50 / 3e-08 Chaperone DnaJ-domain superfamily protein (.1) AT1G79940 52 / 4e-08 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT4G21180 50 / 8e-08 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT3G62600 49 / 2e-07 ATERDJ3B DNAJ heat shock family protein (.1) AT2G33735 47 / 3e-07 Chaperone DnaJ-domain superfamily protein (.1) AT1G77930 48 / 6e-07 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026061 [exp] 261 / 4e-91 AT1G80920 136 / 1e-41 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10024067 [exp] 156 / 2e-49 AT1G80920 130 / 4e-39 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10041671 [exp] 149 / 8e-47 AT1G80920 138 / 2e-42 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10003380 [exp] 63 / 5e-12 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10016510 [exp] 62 / 5e-12 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10040777 [exp] 62 / 6e-12 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10002852 [exp] 62 / 8e-12 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039293 [exp] 56 / 1e-09 AT1G79940 1086 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Lus10027536 [exp] 56 / 2e-09 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043100 [exp] 167 / 1e-53 AT1G80920 129 / 2e-38 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Potri.003G183700 [exp] 153 / 3e-48 AT1G80920 130 / 4e-39 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Potri.016G120000 [exp] 61 / 1e-11 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G072700 [exp] 56 / 6e-10 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G122600 [exp] 52 / 2e-08 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.019G041400 [exp] 49 / 5e-08 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G072200 [exp] 50 / 1e-07 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 50 / 1e-07 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.002G090600 [exp] 49 / 2e-07 AT1G77930 376 / 1e-132 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G198000 [exp] 49 / 3e-07 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10014352 pacid=23164651 polypeptide=Lus10014352 locus=Lus10014352.g ID=Lus10014352.BGIv1.0 annot-version=v1.0 ATGGCCACCACTGCTTTCGCCGCTAATGGAATGATCGGAGGAAGCCGATGCGACGGATCTTCGAACGGCCGGAAGAACAATGTCGCCGGTAGAAGAAACT CGTCGCCGATGTTCTGCGTAGCTTCTTCGTCTTCGGTGATGGATCCTTACAAAACACTGAGGATCCAGCCCGGTGCTTCTGAATCAGAGGTCCGGAAAGC CTTCCGCAAGCTCGCTCTCCAGTATCATCCAGATGTTTGCAAAGGGAAAAACTGCGGGGTTCAGTTCAGCCAAATCAATGCAGCCTACGGCGCTGTGATG AGCAGACTGAGAGAGGAACCGTCGCCGGAGGAGGAGATGGCGGAAGAAGTTGCGGAGGAGCCGATGTATGCTCCAGATTACGAATTGTGGGAGGAGTGGA TGGGATGGGAAGGAGCAGGAATCAGGGATTACACGTCTCATATCAATCCTTACATTTGA
AA sequence Show only first row Show all	>Lus10014352 pacid=23164651 polypeptide=Lus10014352 locus=Lus10014352.g ID=Lus10014352.BGIv1.0 annot-version=v1.0 MATTAFAANGMIGGSRCDGSSNGRKNNVAGRRNSSPMFCVASSSSVMDPYKTLRIQPGASESEVRKAFRKLALQYHPDVCKGKNCGVQFSQINAAYGAVM SRLREEPSPEEEMAEEVAEEPMYAPDYELWEEWMGWEGAGIRDYTSHINPYI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	0	1
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	4.0	0.8680
AT3G22430			unknown protein		Lus10021918 [exp]	4.5	0.7675
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	6.0	0.8369
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10012577 [exp]	6.2	0.7834
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	6.3	0.8516
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	11.0	0.8292
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	14.7	0.7979
AT1G72550			tRNA synthetase beta subunit f...		Lus10009382 [exp]	17.7	0.7570
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	18.8	0.7935
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	22.4	0.8102

Compare expression of checked genes

Lus10014352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.