Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16010 652 / 0 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 640 / 0 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT2G03620 359 / 5e-121 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G09690 297 / 2e-97 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G19640 290 / 2e-93 MRS2-3, MGT4 magnesium transporter 4 (.1) AT5G64560 267 / 2e-85 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT3G58970 265 / 2e-84 MRS2-4, MGT6 magnesium transporter 6 (.1) AT4G28580 201 / 4e-60 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09720 167 / 2e-48 Magnesium transporter CorA-like family protein (.1) AT5G09710 158 / 1e-44 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026063 [exp] 795 / 0 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10037081 [exp] 362 / 2e-123 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10036901 [exp] 268 / 1e-86 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2) Lus10021887 [exp] 264 / 3e-84 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10015459 [exp] 258 / 3e-81 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10022218 [exp] 255 / 1e-78 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10024860 [exp] 238 / 3e-74 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10026745 [exp] 232 / 1e-72 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10001373 [exp] 230 / 5e-72 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183600 [exp] 711 / 0 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G043200 [exp] 711 / 0 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G096200 [exp] 392 / 6e-134 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 372 / 2e-126 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.009G086300 [exp] 286 / 2e-92 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.008G161400 [exp] 283 / 8e-92 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.007G098200 [exp] 281 / 5e-91 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.010G077900 [exp] 279 / 4e-90 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.007G098000 [exp] 261 / 1e-82 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.006G081700 [exp] 258 / 2e-81 AT3G58970 538 / 0.0 magnesium transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10014353 pacid=23164760 polypeptide=Lus10014353 locus=Lus10014353.g ID=Lus10014353.BGIv1.0 annot-version=v1.0 ATGGCCGATCTGAAAGAGCGGCTGCTTCCACCAAAACCTGCATCTGCAGTTAACCTTAGAGATCCATCATATAGACCATCTGCTTCTGGTCGTCAACAGT TTCAAGGTGTGGATGTTATGGGGTTGAAGAAGCGTGGACAGGGCCTTCGTTCTTGGATTCGTGTTGATTCATCGGGGAATTCCCAGATTATTGAAGTAGA CAAGTTCACTATGATGCGGCGCTGTGATTTACCTGCTCGGGACCTCCGCCTACTTGACCCTCTGTTTGTGTACCCTTCCACGATTCTTGGACGAGAGAAA GCTATTGTTGTAAACTTGGAGCAGATTCGCTGCATTATTACAGCAGATGAGGTTCTGCTTCTAAATTCACTTGACAATTATGTGTTGCAATATGTAGTGG AGCTGCAAAGGCGACTTACTACCGTTGCAGTAGGTGAGGTCTGGCAATCTGAAGGTCCTGAATTGAATAGGAGGAGAAGTAGTAGGAATTACGATAATGT ATTTGGAGCTCTGTCCCCTGATTATTTGCCCTTTGAGTTTAAGGCTCTTGAAGTTGCTTTGGAGGCTGCCTGTACATTCCTTGATTCTCAGGCAGCAGAG TTGGAAATTGAAGCCTATCCGTTATTGGATGAACTGACATCCAAGATCAGTACTCTAAACTTGGAGCGAGTGCGTCGATTGAAAAGCAGACTTGTAGCCT TAACCCGGAGAGTACAGAAGGTTAGGGATGAGATAGAACAGCTAATGGACGATGACGGGGATATGGCTGAAATGTATCTCACTGAAAAGAAAAGCCGAAT GGAGTCATCGTTTTACGAACAAGGTTCCATGGGGGGATTCAGGTCAAACGATGGAGCAGTATCAGCCTCGGCTCCTGTTTCTCCTGTATCTTCACCCCCA GATTCCAGGCGGCTGGACAAATGCTTAAGCATTGCAAGGAGTAGGCATGAAAGCATGAGAAGTTCCGAAAGCGGCACAGAGAGTATAGAAGAATTGGAAA TGTTGCTGGAAGCATACTTTGTAGTCATCGATAGCACCTTAAACAAGTTGACATCGTTGAAGGAGTATATCGATGACACAGAAGATTTCATCAATATCCA GCTGGATAACGTACGAAACCAGCTGATCCAATTCGAGCTTATACTCACGACAGCAACCTTTGTGGTAGCCATATTCGGGGTGGTAGCAGGTATCTTCGGG ATGAACTTTGCGATACCTCTGTTCGATAATCCTGGTGCGTTTAAGTGGGTACTGATGATAACTGGAGTCTGTGGGGTGTTCATATTTTGTGCATTTGTAT GGTTCTTCAAATACAGAAGACTGATGCCGCTATAG
AA sequence Show only first row Show all	>Lus10014353 pacid=23164760 polypeptide=Lus10014353 locus=Lus10014353.g ID=Lus10014353.BGIv1.0 annot-version=v1.0 MADLKERLLPPKPASAVNLRDPSYRPSASGRQQFQGVDVMGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREK AIVVNLEQIRCIITADEVLLLNSLDNYVLQYVVELQRRLTTVAVGEVWQSEGPELNRRRSSRNYDNVFGALSPDYLPFEFKALEVALEAACTFLDSQAAE LEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMESSFYEQGSMGGFRSNDGAVSASAPVSPVSSPP DSRRLDKCLSIARSRHESMRSSESGTESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELILTTATFVVAIFGVVAGIFG MNFAIPLFDNPGAFKWVLMITGVCGVFIFCAFVWFFKYRRLMPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10014353 [exp]	0	1
					Lus10002418 [exp]	14.9	0.7719
AT1G70480			Domain of unknown function (DU...		Lus10013018 [exp]	21.4	0.7487
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	23.9	0.7214
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	36.4	0.7060
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	37.1	0.7022
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	44.0	0.7116
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	44.4	0.7185
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	47.5	0.7153
AT3G61610			Galactose mutarotase-like supe...		Lus10000254 [exp]	59.2	0.6945
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	74.2	0.6833

Compare expression of checked genes

Lus10014353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.