Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16570 616 / 0 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026065 [exp] 938 / 0 AT1G16570 646 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10031569 [exp] 352 / 1e-117 AT1G16570 242 / 2e-75 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394300 [exp] 680 / 0 AT1G16570 617 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10014357 pacid=23164683 polypeptide=Lus10014357 locus=Lus10014357.g ID=Lus10014357.BGIv1.0 annot-version=v1.0 ATGAGCAACAACAAGAGAGGAAGAGCTTGTGTGGTTGTCTTAGGAGACATTGGCCGCAGTCCTAGAATGCAATATCATGCCCTTTCTCTTGCCAATCAGG CAAATTTTGAAGTGGACATTGTCGGATATGGAGGTTCTATACCACATGCTGCATTAGTGGAGCACCATTTTATCCATGTTTACAGAATGAAGCCAATACT CCTTCAGGGCCTGCCAAAGGTGCTTAAACCTTTGGTTCTTCTACTTAAGCCTTTAATCCAATTCGTTATGTTACTCTGGTTTCTCTGCATCAAAATAGAA CGGCCGGATGTTTTCCTGGTTCAGAATCCACCATCTGTTCCGACCTTGATGGCAGTGAAATGGGCAAGCTGGCTACGGAATTCTGCTTTCGTTATTGACT GGCACAACTTTGGATACACCTTGATGGCTCTATCTGTCGGAAGAAATAGTCGATTTGTTGCCGTATATCGTTGGTTTGAGCAGCATTTTGGTAAGATGGC TAAAGGTGCACTGTGCGTAACAAAAGCAATGCAACACGAATTGGCTCAGAACTGGGGAATTAATGCCACAGTTCTATATGATAAGCCTCCGGAGTTTTTC CATCCTACTCCATTGGAAGAAAAGCACAAGGTGTTGTTTTGCAGGTTGGATAAAAGTATCATTCAACCCCCTGGCATCCGAGATTGTGTTAGCTTTGAAA AAACAGCATTAGAAAATGAGACTCTATTTACCACAGTGACTGAAGGTCATATTATTCCTAAACCAAATCGACCTGCACTTGTTGTTAGCAGCACGAGCTG GACACCTGATGAAGATTTCGGTATTCTGTTGGAAGCTGCTGTTATGTATGACAGACGGGTTACCGCAATCTTGAATGAAAATGATAATGTTGACGCTGAA GTTCTTTGGGAAGAAATGTCTCATGGAAAAGAGATTATCTACCCCAGACTATTATTTGTTATTACAGGTAAGGGGCCTGAGAAAGAGAAGTATGAAGAGA AGATAAAGCGCTTGAGGCTGAAGCATGTTGCATTTCGTACAATGTGGTTGTCAGCTGAGGACTATCCTCTGCTTCTTGGTTCTGCTGATCTTGGTGTGTG TTTGCACACTTCATCATCAGGATTGGATCTTCCAATGAAGGTGGTTGATATGTTTGGTTGTGGACTGCCTGTTTGTGCAGTTGCATACTCCTGCATTCAT GAACTAGTAAAAGTTGGGGAAAATGGACTACTCTTTTCATCATCTTCAGAGCTAGCTGATCAACTACTGATGTTGTTTGAAGGGTTTCCTGGTAAATGCA ACACATTGGCTTCATTGAGAAATGGGGCAATGGAAGCAGGGTCTTCAAGATGGGTTTCTGAATGGGAGGAACATGCTAAGCCATTAATACTGCAGGCAAG TCTCAGCATTACAAAATCTTGCTTTCCCTTTCTGATTTTATTCCTAATTGGTGTCGAGTTCCATGAAGCTTCAGACTCTACTAGTTTCATATCACTAGAA CTAGCATGA
AA sequence Show only first row Show all	>Lus10014357 pacid=23164683 polypeptide=Lus10014357 locus=Lus10014357.g ID=Lus10014357.BGIv1.0 annot-version=v1.0 MSNNKRGRACVVVLGDIGRSPRMQYHALSLANQANFEVDIVGYGGSIPHAALVEHHFIHVYRMKPILLQGLPKVLKPLVLLLKPLIQFVMLLWFLCIKIE RPDVFLVQNPPSVPTLMAVKWASWLRNSAFVIDWHNFGYTLMALSVGRNSRFVAVYRWFEQHFGKMAKGALCVTKAMQHELAQNWGINATVLYDKPPEFF HPTPLEEKHKVLFCRLDKSIIQPPGIRDCVSFEKTALENETLFTTVTEGHIIPKPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVTAILNENDNVDAE VLWEEMSHGKEIIYPRLLFVITGKGPEKEKYEEKIKRLRLKHVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVAYSCIH ELVKVGENGLLFSSSSELADQLLMLFEGFPGKCNTLASLRNGAMEAGSSRWVSEWEEHAKPLILQASLSITKSCFPFLILFLIGVEFHEASDSTSFISLE LA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Lus10027910 [exp]	2.0	0.8094
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10017147 [exp]	8.1	0.7682
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	10.1	0.8100
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	13.9	0.7905
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	16.6	0.7684
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	16.9	0.7214
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	21.3	0.7951
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	21.9	0.7498
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	22.2	0.7550
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	23.4	0.7871

Compare expression of checked genes

Lus10014357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.