Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54260 453 / 7e-160 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT5G58600 280 / 3e-91 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 269 / 2e-87 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 268 / 7e-87 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G30900 265 / 4e-86 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT2G31110 265 / 5e-86 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40150 257 / 3e-82 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT3G55990 258 / 5e-82 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT5G01360 255 / 2e-81 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G12060 257 / 9e-81 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026066 [exp] 657 / 0 AT3G54260 473 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Lus10033617 [exp] 273 / 3e-89 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10027813 [exp] 271 / 2e-87 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10021066 [exp] 270 / 8e-85 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10005042 [exp] 264 / 8e-85 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10031301 [exp] 263 / 1e-84 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10000988 [exp] 260 / 4e-84 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10011932 [exp] 262 / 9e-84 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 262 / 1e-83 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020900 [exp] 541 / 0 AT3G54260 495 / 1e-175 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Potri.001G278300 [exp] 296 / 7e-98 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.009G072800 [exp] 292 / 3e-96 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.011G106200 [exp] 270 / 8e-88 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090000 [exp] 272 / 9e-88 AT3G12060 290 / 3e-92 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) Potri.002G195800 [exp] 271 / 2e-86 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.016G119100 [exp] 266 / 1e-85 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.001G376700 [exp] 263 / 1e-84 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.013G118500 [exp] 260 / 4e-84 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.006G071500 [exp] 262 / 2e-83 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10014358 pacid=23164691 polypeptide=Lus10014358 locus=Lus10014358.g ID=Lus10014358.BGIv1.0 annot-version=v1.0 ATGGCTGAAACCACCAACATTGTGATCTTCTTCTTGTTGTCTACTGTCAGTCTGTCCTTGTCGTTCGATGTAGAGGATGGATGGAGGAGCCATGACTTCT TCTCATCGTCGTCATCTAGTAAACAAAGGAAGCAGAGTGGGTGTGAGTTGAGTTCAGGGAAATGGGTTTACGACCATTCCTACCCACTTTACGACTCCAA CTCATGTCCTTACCTTACCACCGCCGTCACCTGCCAGAGGAACGGCCGCCCTGACTCTGATTACCAGAAGTGGAGGTGGCAGCCTCATGCTTGCTCTGTT CCAAGGTTTGATGCCCTCAAGTTTTTGGGGAAAATGAGAAGGAAGAGAATAATGCTGGTTGGGGATTCTATAATGAGGAACCAATGGGAATCTCTGGTGT GCTTGGTCCAAGGAGTTATTCCAACTGGCCATAAGATGGTCTCATATAATGGTCCAACTATGGCATTCCATGCTATGGACTATGATGCAACAATAGAGTT CAGCTGGGCACCCTTGCTGGTGGAGCTGAAGAACGGAGACAAGAACAAGAGGATTCTCCACCTTGACTTGATTGAAGAGAATGCTAGATACTGGAGAAAT GTTGATGTCCTCGTCTTTGATTCTGCTCATTGGTGGACTCACTCCGAGGCTTCCAGCTCGTGGGACTATTACATGGAAGGGAACACAATGTTCCAAACCA TGAACCCAATGCTTGCATACCACAAGGGACTCACCACTTGGTCCAAATGGATTGACCTGAATCTCAACCCAACCAAGACCAAAGTCATATTCCGGACCAT GTCCCCGCGGCACAACAAGGAGAACGGCTGGAAGGGCTACAACCAGAGGCAGCCATTGGCATACTTGAGCCACAATCACGAGCCGGAACCGGTGGTGGTG GTGAAGGAAGTGGTGAGGAGGATGAGGTTTCCAGTGTACATACAGGACATCACTTTGATGTCTGCTCTCAGAAGGGATGGTCATCCTTCGGTGTACAGGA GGGTCGTAAGTCAGGCGGAGAAGAACAAGAAGAAGGATGAGATTCGAAAGGATTTGTCGTCGGATTGTAGCCACTGGTGTCTACCTGGTGTGCCTGATAT CTGGAATGAGATGCTCACTTCTCTGCTTTAG
AA sequence Show only first row Show all	>Lus10014358 pacid=23164691 polypeptide=Lus10014358 locus=Lus10014358.g ID=Lus10014358.BGIv1.0 annot-version=v1.0 MAETTNIVIFFLLSTVSLSLSFDVEDGWRSHDFFSSSSSSKQRKQSGCELSSGKWVYDHSYPLYDSNSCPYLTTAVTCQRNGRPDSDYQKWRWQPHACSV PRFDALKFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGHKMVSYNGPTMAFHAMDYDATIEFSWAPLLVELKNGDKNKRILHLDLIEENARYWRN VDVLVFDSAHWWTHSEASSSWDYYMEGNTMFQTMNPMLAYHKGLTTWSKWIDLNLNPTKTKVIFRTMSPRHNKENGWKGYNQRQPLAYLSHNHEPEPVVV VKEVVRRMRFPVYIQDITLMSALRRDGHPSVYRRVVSQAEKNKKKDEIRKDLSSDCSHWCLPGVPDIWNEMLTSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	0	1
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	1.7	0.9466
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	2.0	0.9285
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	2.8	0.9365
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	3.2	0.9244
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	3.9	0.9295
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	5.7	0.9179
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	6.0	0.9242
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	6.3	0.9051
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	8.1	0.9012
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	8.5	0.8787

Compare expression of checked genes

Lus10014358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.