Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 77 / 3e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 67 / 5e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 64 / 3e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 62 / 1e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 47 / 5e-06 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 47 / 6e-06 B3 REM5 transcriptional factor B3 family protein (.1) AT5G66980 44 / 5e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 44 / 7e-05 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G33280 43 / 0.0001 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 43 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026067 [exp] 369 / 5e-130 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010080 [exp] 99 / 4e-24 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1) Lus10023079 [exp] 93 / 2e-22 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 93 / 8e-22 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 86 / 5e-19 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 83 / 7e-19 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 85 / 1e-18 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 79 / 5e-18 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 81 / 1e-17 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 84 / 3e-18 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 80 / 7e-18 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 77 / 6e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 74 / 6e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 72 / 9e-15 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 73 / 1e-14 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 68 / 7e-13 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 56 / 1e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 54 / 5e-08 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 52 / 1e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10014359 pacid=23164698 polypeptide=Lus10014359 locus=Lus10014359.g ID=Lus10014359.BGIv1.0 annot-version=v1.0 ATGAAGAGCAAGACCACAGATTGTGGAGATGTGTTTGATTCCGGAAAGCCGCATTTCTTCAAGGTCATCCTTGAAGAAACAATTACAGACAAAAGGCTGG CCATTCCTGAGACGTTTGTAGAGAAACATGGAGCAGCCTTGTCTAGCCCCGTTACCCTCAAGCTTCCGGGCGGAACGACATGGAAAATCGACTTGCTGAT AGAGATATGCAGCACCAGCACCAGCACAACTAGTGCTAACGAGAACAGATTCTGGCTGTGGAATGAAACGTGGCACAAGTTTGCACAACATTACTCCTTG AAACACGGTCACTCTTTGGTCTTCCAGTATGAGGGCGGCTCACTCTTCACCGTAGTCATCTTCGACGTTCTCAAAGGTCCAGAGATCCAATACCCAGAAA GTATAATCAGCAGCAGCAGCAGGGATGAATTTGTGTCCAAGTACCCGTTTTTCAAAGTTGTGATTAGCCAGATTCATTTGGCGAAAAACAATATGCGGGT GCCTAGGAAGTTTTTCCAGAGGTACATGATGATGATGAAGGGAAAGAAAGAGGAAGTGAAGGTGCAAGTTGGGGAAGAGTGGTGGAAAGTGAATGTTTGC AGATACAAATCTGGAAATGGAATATATAATGTGCAGATGAATGGGGGATTTCCTTGCTTTGCTAGGGACAACTCTATTGAAGCTGGAGATGTTTGTTTCT TTGAGCTGCTTACTACTGAGGAGGGTGACGATGAGCTATCTTTTAAGGTCACCATTGCGCGTGAAGGTTGGAAGGAAAGAAAGGAAGTAGCAGTAGCTAA TTGA
AA sequence Show only first row Show all	>Lus10014359 pacid=23164698 polypeptide=Lus10014359 locus=Lus10014359.g ID=Lus10014359.BGIv1.0 annot-version=v1.0 MKSKTTDCGDVFDSGKPHFFKVILEETITDKRLAIPETFVEKHGAALSSPVTLKLPGGTTWKIDLLIEICSTSTSTTSANENRFWLWNETWHKFAQHYSL KHGHSLVFQYEGGSLFTVVIFDVLKGPEIQYPESIISSSSRDEFVSKYPFFKVVISQIHLAKNNMRVPRKFFQRYMMMMKGKKEEVKVQVGEEWWKVNVC RYKSGNGIYNVQMNGGFPCFARDNSIEAGDVCFFELLTTEEGDDELSFKVTIAREGWKERKEVAVAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	0	1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	2.6	0.9770
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	9.5	0.9511
AT1G30320			Remorin family protein (.1)		Lus10023284 [exp]	10.1	0.9318
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	10.4	0.9660
AT4G37810			unknown protein		Lus10019254 [exp]	12.0	0.9186
AT2G14660			unknown protein		Lus10033766 [exp]	12.1	0.9182
AT4G10810			unknown protein		Lus10010114 [exp]	12.6	0.9125
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10001242 [exp]	12.7	0.9109
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	14.4	0.8833
AT1G52190			Major facilitator superfamily ...		Lus10020101 [exp]	16.2	0.9447

Compare expression of checked genes

Lus10014359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.