Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50520 311 / 2e-107 Phosphoglycerate mutase family protein (.1) AT5G04120 228 / 2e-74 Phosphoglycerate mutase family protein (.1) AT1G22170 62 / 6e-11 Phosphoglycerate mutase family protein (.1) AT5G22620 59 / 1e-09 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) AT1G78050 54 / 3e-08 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT1G07110 50 / 1e-06 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026068 [exp] 493 / 1e-177 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1) Lus10020910 [exp] 56 / 2e-08 AT1G22170 476 / 3e-170 Phosphoglycerate mutase family protein (.1) Lus10033465 [exp] 56 / 2e-08 AT1G22170 478 / 8e-171 Phosphoglycerate mutase family protein (.1) Lus10015442 [exp] 53 / 9e-08 AT5G22620 178 / 1e-52 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10020553 [exp] 52 / 3e-07 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10026380 [exp] 49 / 4e-06 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031298 [exp] 48 / 5e-06 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031299 [exp] 48 / 5e-06 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10042278 [exp] 47 / 9e-06 AT1G07110 1122 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040700 [exp] 320 / 7e-110 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) Potri.011G052200 [exp] 55 / 2e-08 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.002G093300 [exp] 55 / 2e-08 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.009G073800 [exp] 55 / 3e-08 AT1G07110 1170 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.005G168000 [exp] 54 / 4e-08 AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) Potri.005G078100 [exp] 52 / 1e-07 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1) Potri.001G279100 [exp] 50 / 8e-07 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.004G187700 [exp] 50 / 9e-07 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10014360 pacid=23164681 polypeptide=Lus10014360 locus=Lus10014360.g ID=Lus10014360.BGIv1.0 annot-version=v1.0 ATGACCACGCTGCGCACTTGGCGCACTATACAACCGCTGCCCTCAAAAAGTCGTCCAGATCGTTCACTGAAGCTTCCTCGGCTCCTGAAACTCTCCGTCG CCGGTTGCATCAAAGGTCACAGCCCTCCGCTCCTGTTTATCCGCCGTCGCCTCCGATCTGATCGACTATCGGCTCTCTCCGTCAAAACCGTCGAGCAGGA GTTGGAATCCATGTCAGAGTCCAACTCCATTTCCAGCTCTGCTCACCCAACTTATACGGAGATTGTCGTCGTCCGTCATGGCGAAACGGAGTGGAATGCT GGTAGAAAGATTCAGGGACATCTCGATGTTGATTTGAATGAAGCTGGCAGAAAGCAAGCGGCTTTGGTGGCTGAACGGTTATCCAATGAACCCGAAATTT CTGCTGTGTATTCTTCCGACTTGAAACGAGCTTTTGATACCGCACAGGCAATTGCTAATAGATGTGGTGGTCTAGAGGTCATCAAAGAGCTAGGCCTGCG AGAAAGACATTTAGGGGATCTTCAAGGCCTTGCTTTGAGTGAAGCTTCCAAAGTTTGTCCACAGGCCTATGAGGCATTTTTATCCCACGACTCCAGCCGA GATATTCCTGGTGGTGGTGAAAGTCTAGATAAACTTTATGAGCGTTGCACATCATCATTGCAAAGGATTGCTGCGAAGCATAGAGGGGAACGAGTAGTTG TGGTGAGTCATGGAGGTACCATCAGAGCACTACACAAGAGGGCTTGCCCGGATAAAAGGCCTGGGACAGTACTGAATACTTCTGTGCACATCTTTCACTT ATCAGATGAAGACCAATGGAGCATAAAATCTTGGGGCGATGTTAGCCATCTCAACCAAACAGGATTCCTCAAGTCTGGTTTTGGGGGTGACAGAACCTCT GGTTAG
AA sequence Show only first row Show all	>Lus10014360 pacid=23164681 polypeptide=Lus10014360 locus=Lus10014360.g ID=Lus10014360.BGIv1.0 annot-version=v1.0 MTTLRTWRTIQPLPSKSRPDRSLKLPRLLKLSVAGCIKGHSPPLLFIRRRLRSDRLSALSVKTVEQELESMSESNSISSSAHPTYTEIVVVRHGETEWNA GRKIQGHLDVDLNEAGRKQAALVAERLSNEPEISAVYSSDLKRAFDTAQAIANRCGGLEVIKELGLRERHLGDLQGLALSEASKVCPQAYEAFLSHDSSR DIPGGGESLDKLYERCTSSLQRIAAKHRGERVVVVSHGGTIRALHKRACPDKRPGTVLNTSVHIFHLSDEDQWSIKSWGDVSHLNQTGFLKSGFGGDRTS G

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50520			Phosphoglycerate mutase family...		Lus10014360 [exp]	0	1
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	11.3	0.8541
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	16.8	0.8791
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	19.1	0.8460
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	20.8	0.8744
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	22.0	0.8743
AT3G27340			unknown protein		Lus10022323 [exp]	23.7	0.8556
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10014117 [exp]	30.0	0.8697
AT1G01210			DNA-directed RNA polymerase, s...		Lus10005984 [exp]	34.9	0.8372
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	37.0	0.8075
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	40.9	0.8571

Compare expression of checked genes

Lus10014360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.