Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80870 517 / 2e-175 Protein kinase superfamily protein (.1) AT2G45590 145 / 3e-36 Protein kinase superfamily protein (.1) AT4G25390 140 / 3e-35 Protein kinase superfamily protein (.1.2) AT5G15730 137 / 1e-34 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT5G06740 128 / 1e-30 Concanavalin A-like lectin protein kinase family protein (.1) AT3G58690 124 / 1e-30 Protein kinase superfamily protein (.1) AT5G54590 124 / 2e-30 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G51770 125 / 8e-30 Protein kinase superfamily protein (.1) AT5G35370 122 / 2e-28 S-locus lectin protein kinase family protein (.1) AT4G02630 119 / 3e-28 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026069 [exp] 906 / 0 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10036533 [exp] 169 / 7e-45 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10041395 [exp] 165 / 6e-43 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10027393 [exp] 152 / 2e-38 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 135 / 7e-34 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 134 / 9e-34 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10031679 [exp] 129 / 4e-33 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 127 / 4e-30 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 126 / 7e-30 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183100 [exp] 577 / 0 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 543 / 0 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 168 / 6e-44 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 166 / 3e-43 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 130 / 2e-31 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 127 / 3e-31 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G026200 [exp] 127 / 1e-30 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.018G132900 [exp] 124 / 3e-30 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G025425 [exp] 126 / 5e-30 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.009G100400 [exp] 124 / 2e-29 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014361 pacid=23164710 polypeptide=Lus10014361 locus=Lus10014361.g ID=Lus10014361.BGIv1.0 annot-version=v1.0 ATGCCTGCCAGAGCCTTACTGTCGTCGCCGCCGTTAGCCGACGACCACTTCCGACCTCGACCGACGACCACTTCCGACCTCGACCGACCTTCCCAACAAA AAGCAGTTTCCTTTTCCTATCCCTCACAATCTCCGCCACCGCAGTCATCATCCTCACCCTCCTCTACTTCCTCTACCACCTCTGCCATTCCTTCCTCCTC CAACTATACCGTTCCGGCGGCAAAGCCCGCACAATCCCATTCGACGCTCCTCTCAACAAACTCAAGCGCTTCACCTACTCGGAACTCAAACTCGCCACCA ACGACTTCCACGACTCTTCCGTCATCGGCAGGGGGGGCCGCCACCGTATTCCGCGCCATTGCCAAAGACGGGAAGCTCTACGCCGTCAAGCGCCTCGACG GCGACCTCACTCTCCACTCCGAGCAGGAGTTCCAGAACGAGCTCCAGATCCTCGGCGGGTTGAAATCCCCGCTTTTAGTCACGCTATTGGGCTACTGCGT GGAGAAGAAGCACCGATTGCTCGTTTACGAGTATATGCCGAACAAGAGTCTCCAGGAATTGCTGTTCGGAGAAGACGACGGCACCGATAATGTTCTGAGC TGGGAGAGAAGGTTTCTCGTGATTCTCGATGTTTCCAGGGCTTTGGAATTCCTTCACACGGGATGTGACCCTCCCGTGATTCACGGAGATATTAAACCGA GTAATGTGCTGCTCGATTTCGATTTCAAAGCCAAAATCGCTGATTTCGGTCTGTCTCGGGTCAAAAGGGAAACAGAGTTGTTCAGTCAGGATCTGATGTG GAAGAGTCAGGATCTTTCTGGAACGTTGGATCCGAGCAACGAGGAGGTCGTCGATTTCGCCAGAGCTCTACAGGCATCGGCTTCTGGTAAAGGAGCTGCT GCTTGTAACTTCAATGGTGGGTTGAAGTTCAGTTCTATGAAAGGGAAGGAGGTCTCTGGAGATGAGCACAGTAAGGAGCTGAATTGCGGTCTTGTTGCCG ATCAGGAGGAGGAGGAGCTGGAGGATAGCGGTAAACAATGGGGGAAAGATTGGTGGTGGAGGCAAGACGGTAATGAAGAATTGTGCAGCAAAGATTACGT TATGGAATGGATCGGCAGCCAGATTTCTCCTTCCTCAAACCCTAATTGGGAGGAGGAACAGGATGATCACAAATCAATCACTCCAGCCGCCGTTGTAACC GCTCATCTTCCGACGGCGGAAGCTCCTCCGTGCAATGGACTTGAATCGAAGAATGACAGTGTCAATGGAGGACGGGGGAAGAAGAACAGGAAAATGAAGG AATGGTGGAAGGAGGAGCACTTGGAGGAGATGAGCAAGAAAGGAAGTTTCAGCAGCGGCATCAATCGGCTGAAGGTCAATAACAACGTCACAAAGTTGAA GAAAGGATTGAAGATCCGTTTCCACAGGCGGAAGAGATCATCATCATCCATGGAGAGGAAACAGGAAGACGAAGGAGAGTTCAGTTTCAGGAGAGGGTGG AGGAGGAAGAAGAAATCAAACAACCAGAACGGTAATAATCAGCCTCAGGGGAGCGAAATGTGGAGCGGGGATCTGTTCAGCCGGGAGCTTAGCAGCACGA CGACCAGCATGAGAGGGACATTGTGCTACGTTGCGCCGGAGCACGGCGGCGGCGCCGGAGTATCGTGCGGCGGCGGCGGTGGATATTTGGAGAAAGCAGA TATATACAGCTTGGGTGTATTGATTCTGGTGATTGTTTCGGGAAGAAGGCCGCTCCATGTGCTGGCTTCTCCGATGAAGCTGGAGAAGGCGAATTTGATA AGCTGGTGTAGGCAGCTGGCTCATCAGGGTAGTAATGGCGACATATTGGAGATTGTGGACGAGAGGTTGAAGGAGGATTATAACAAGGAGGAAGCGAGTT CGTGTATAAACTTGGCGCTTATTTGCCTGCAGAAGATGCCGGAGCTCCGCCCGGATATCGGTGACATTGTGAGAATACTGAAAGGGGAAATGGAGATTCC TCCGCTTCCGTTTGAGTTCTCGCCGTCTCCTCCTCCTCCTCCTTCAAAGTTGTTACTACACAAGTCCAGGAGAAAATACAGGGCTGCTAGTACAGAGTAG
AA sequence Show only first row Show all	>Lus10014361 pacid=23164710 polypeptide=Lus10014361 locus=Lus10014361.g ID=Lus10014361.BGIv1.0 annot-version=v1.0 MPARALLSSPPLADDHFRPRPTTTSDLDRPSQQKAVSFSYPSQSPPPQSSSSPSSTSSTTSAIPSSSNYTVPAAKPAQSHSTLLSTNSSASPTRNSNSPP TTSTTLPSSAGGAATVFRAIAKDGKLYAVKRLDGDLTLHSEQEFQNELQILGGLKSPLLVTLLGYCVEKKHRLLVYEYMPNKSLQELLFGEDDGTDNVLS WERRFLVILDVSRALEFLHTGCDPPVIHGDIKPSNVLLDFDFKAKIADFGLSRVKRETELFSQDLMWKSQDLSGTLDPSNEEVVDFARALQASASGKGAA ACNFNGGLKFSSMKGKEVSGDEHSKELNCGLVADQEEEELEDSGKQWGKDWWWRQDGNEELCSKDYVMEWIGSQISPSSNPNWEEEQDDHKSITPAAVVT AHLPTAEAPPCNGLESKNDSVNGGRGKKNRKMKEWWKEEHLEEMSKKGSFSSGINRLKVNNNVTKLKKGLKIRFHRRKRSSSSMERKQEDEGEFSFRRGW RRKKKSNNQNGNNQPQGSEMWSGDLFSRELSSTTTSMRGTLCYVAPEHGGGAGVSCGGGGGYLEKADIYSLGVLILVIVSGRRPLHVLASPMKLEKANLI SWCRQLAHQGSNGDILEIVDERLKEDYNKEEASSCINLALICLQKMPELRPDIGDIVRILKGEMEIPPLPFEFSPSPPPPPSKLLLHKSRRKYRAASTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	0	1
AT1G11915			unknown protein		Lus10038443 [exp]	1.4	0.8918
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	1.7	0.8756
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	2.0	0.8889
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	6.6	0.8550
AT4G34180			Cyclase family protein (.1)		Lus10001508 [exp]	6.9	0.8522
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	7.7	0.8550
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	9.5	0.8470
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	9.9	0.8514
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	13.0	0.8411
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	13.0	0.8483

Compare expression of checked genes

Lus10014361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.