Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 39 / 0.0005 receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018233 [exp] 58 / 3e-11 ND / Lus10040672 [exp] 57 / 5e-11 ND / Lus10018232 [exp] 51 / 1e-08 ND / Lus10040673 [exp] 49 / 8e-08 ND 36 / 0.007 Lus10040671 [exp] 47 / 2e-07 ND / Lus10003724 [exp] 45 / 2e-06 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10008656 [exp] 44 / 5e-06 AT4G05200 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10028019 [exp] 41 / 4e-05 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10028026 [exp] 40 / 7e-05 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G029500 [exp] 44 / 8e-06 AT5G48540 0 / 1 receptor-like protein kinase-related family protein (.1) Potri.011G030500 [exp] 43 / 2e-05 AT5G48540 109 / 4e-28 receptor-like protein kinase-related family protein (.1) Potri.005G208400 [exp] 41 / 4e-05 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.011G030800 [exp] 40 / 0.0001 AT3G22060 105 / 5e-27 Receptor-like protein kinase-related family protein (.1) Potri.004G024404 [exp] 40 / 0.0003 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028700 [exp] 39 / 0.0004 AT4G21410 460 / 4e-152 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10014362 pacid=23164649 polypeptide=Lus10014362 locus=Lus10014362.g ID=Lus10014362.BGIv1.0 annot-version=v1.0 ATGTCAGTCGTCCTGTTTTCAACTTTCTACCTCTCCGGGAGCTTAGTGCTACTAGTTTCTGCTTATTCCGCCGGCGACTTGAACGGATATTGCAACCACG TCAAGTCCAAGGACGGTTCCAATCCTTTTGTGACTGCTTCCATAGAGTTGTTGGCCACATTGGCCAGCGAGATGCCTAACAAGCCCGAGTTCTACTTATG CACCGATCAAACTTTCGGAATTTGCACCCATCATGGCGAAGCCGGATGCATTATCACTGCTAGTGTCAAGGATTGCGCCAACTGTCTCGTGGTCGCTAAG GATTACCTGCTGACGACTTGCAATAACATGATCGGCGGTAGGACCTGGGAGAGCAGTAATCGTTGTTACATGAGGTATGAGAACTATAGGAACGTCTGCA CCCCTAAGTAG
AA sequence Show only first row Show all	>Lus10014362 pacid=23164649 polypeptide=Lus10014362 locus=Lus10014362.g ID=Lus10014362.BGIv1.0 annot-version=v1.0 MSVVLFSTFYLSGSLVLLVSAYSAGDLNGYCNHVKSKDGSNPFVTASIELLATLASEMPNKPEFYLCTDQTFGICTHHGEAGCIITASVKDCANCLVVAK DYLLTTCNNMIGGRTWESSNRCYMRYENYRNVCTPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10014362 [exp]	0	1
					Lus10019580 [exp]	1.0	0.8172
AT5G52975			Protein of unknown function (D...		Lus10032886 [exp]	13.4	0.6860
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	13.7	0.6997
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10018706 [exp]	17.1	0.6478
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	17.5	0.6364
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	19.6	0.6968
					Lus10010418 [exp]	21.6	0.6635
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10034019 [exp]	22.9	0.6831
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	28.0	0.6436
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	35.3	0.6446

Compare expression of checked genes

Lus10014362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.