Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 420 / 2e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 408 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 370 / 8e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 370 / 8e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 367 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 345 / 1e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 275 / 3e-91 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G15950 256 / 2e-83 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 248 / 9e-81 CCR2, ATCCR2 cinnamoyl coa reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026070 [exp] 654 / 0 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 581 / 0 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 552 / 0 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 479 / 2e-167 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 423 / 2e-149 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 417 / 4e-147 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 394 / 8e-138 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 369 / 6e-121 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10019732 [exp] 329 / 1e-112 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057500 [exp] 440 / 2e-156 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 439 / 5e-156 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 428 / 2e-151 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 424 / 8e-150 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 404 / 1e-141 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G120200 [exp] 269 / 6e-89 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G138600 [exp] 268 / 2e-88 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G045000 [exp] 261 / 7e-86 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 260 / 3e-85 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 260 / 3e-85 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10014363 pacid=23164689 polypeptide=Lus10014363 locus=Lus10014363.g ID=Lus10014363.BGIv1.0 annot-version=v1.0 ATGAGCGGCGAAGGAAGAGTAGTATGTGTGACGGGCGGGTCGGGTTACATAGCCTCATGGATCATCAAGCTTCTGTTGGAACGCGGCTATACTGTCAAAA CCACTGTTCGTGACCCAACTGATAAAACTAAGACCCAGCACTTGCTTTCCCTTGATGGGGCGGGAGATAGGCTAAAGCTGTACAAAGCAGATCTTAATGA AGATGGGTGTTTTGATTCTGCTGTGGAGGGATGCGAAGGAGTCTTCCATACTGCCTCCCCTGTTTTCTTTCAATCTACCAACCCACAGGCAGATCTAATT GAACCTGCAGTAAAGGGCACACTCAGCGTTCTTAAAGCATGTGCAAAAGTTCCTTCTATCAAGAGAGTTGTTCTAACCGCGTCGATGGGTTCAGTGCTCT GGAATGGGAAGCCTCGTTCTCCTGGTGTTGTGGTCGATGAGACTTGGTTCTCTGATCCACAATTTTGTGAGAAGAAACAGTTTTGGTACATGCTTTCGAA AACTTTGGCCGAGGAGGCTTCCTGGAAATTTTCGAAAGAGAATGGCATTGATCTTGTTGCGATTAATCCAGGGTTCGTAATCGGTCCTTACCTGCAGCAA TCCATTAACTTAACGGTGGAGGAGGTTCTGAAGCTTGTAAATGGAACTAGAGAATTTCCAGGTGATATCTATAGATTTGTTGATGTACGAGATGTGGCGA ACTCGCATATCCTAGCATTCGAGGTCCAATCAGCTAGTGGCAGATATTGTATAGTCGGAAGAACAGCACACTATAGCGAGGCTTTGGAGATTTTGCATGA GCACTACCCTGATCTACCAGTATTTGCAAAATGGGAGAATGACAAGACATCTCATCCTACATATGAGATTTCTCAAAAGAAGGCAAAGAGCTTGGGTCTC GAGTTTACTCCTCTGGAAGTGACTCTTAGGGATACTATAGAATGTTTCAAGGAGAAGGGTCTACTCAGTTTCTGA
AA sequence Show only first row Show all	>Lus10014363 pacid=23164689 polypeptide=Lus10014363 locus=Lus10014363.g ID=Lus10014363.BGIv1.0 annot-version=v1.0 MSGEGRVVCVTGGSGYIASWIIKLLLERGYTVKTTVRDPTDKTKTQHLLSLDGAGDRLKLYKADLNEDGCFDSAVEGCEGVFHTASPVFFQSTNPQADLI EPAVKGTLSVLKACAKVPSIKRVVLTASMGSVLWNGKPRSPGVVVDETWFSDPQFCEKKQFWYMLSKTLAEEASWKFSKENGIDLVAINPGFVIGPYLQQ SINLTVEEVLKLVNGTREFPGDIYRFVDVRDVANSHILAFEVQSASGRYCIVGRTAHYSEALEILHEHYPDLPVFAKWENDKTSHPTYEISQKKAKSLGL EFTPLEVTLRDTIECFKEKGLLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	0	1
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	1.0	0.9365
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	3.5	0.9246
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	4.0	0.9277
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	6.9	0.9209
AT4G27120			unknown protein		Lus10011161 [exp]	10.2	0.9221
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	11.0	0.9125
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	13.7	0.9140
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	14.1	0.9126
AT2G16385			unknown protein		Lus10017979 [exp]	19.0	0.9165
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	19.0	0.9056

Compare expression of checked genes

Lus10014363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.