Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30240 560 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026071 [exp] 1432 / 0 AT1G30240 601 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238000 [exp] 779 / 0 AT1G30240 602 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014364 pacid=23164693 polypeptide=Lus10014364 locus=Lus10014364.g ID=Lus10014364.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCGAAGAGCTTGAGGGACATGGACGACCCGGAGCTGAAGCCTCGTCTGCTCCGCAGTCTCCTGAAGGAAGACGTTCCCGATGAGAAGAAAC CCTTTGACAATCCTTCAAACCTTACAAGGGTTGTCTCCCGGATTCAAACCCACGAGCTACTCTCCGAATGCTTCTCCGAAACAATGGACCAGAAGCTAAT TGGCCGCTGGAAGTCCGCCGTCGACGACTGGGTCAATCGATTGTTGACGCTGGTGTCTAATCTTAACATGCCAGATAAATCTTGGGCTGGTATATGCTTG CTGGGAGTAACAAGCCAAGAGTGCAGCTCCGAGCGTTTTGTGGCATCATACATCGTCTGGTTTGACAAACTTCTAGTGTCCATGCAGTCATCTGCTGATT CTCAATTTATAAAGGTGGCTTCTTGTGCGTCAATGTCAGATCTTATTACAAGGTTGGCTGGGTTCCCAAAGTTGAAGAAGGATGGGTTATCGTGTGCGGG GAAACTCATTCAACCTCTTCTCAAGATGCTGGATGAGGACTCTCCAGAGTCTGTGCAGGAAATGGCTCTGCATATGTTATCCACAATTATTAATTTATTT CCTGCTTCTCTTCCTCGTTATTATGATAGTGTTGAAGCTGCAATCGCATCTAGAATGTTGTCAGGAAATGGCAGTCTTAGTTTACAGAAGAAGTTTGCTT CTTCCCTAGCATTACTTCCAAAATCCAGAGGAGATGATGAAAGTTGGCTCCTACTAATACGAAGGATTTTATTGTTGCTAAATGGTTATTTAACTGCCGT TTTTGATGGATTAGAAGAGGCAAGTAAATGGGAGGAGTCTGTGAGATTGTTGGTTCCTCCTGGGGAGGTTCCTCCACAAATGATATGGGGTCAAAAGTTG GTAGAAAGAGTATCGGGAAAGGATAGACGGAGATCCAAGTTATCCTCTGTGTTATTATTGATGCATAGCTGTTCAATGATGCTTACCAATTCACACCCTA ACCAGGTACATGTTCCAGTTTGCTCATTATTAGCCCTCGTGGAGAGGGTCTTGATGGTCCATGGCTCTTTGCCAAGTGCCACGTCCTTTGTAATTGCATC TGAACAAGATTATGTGTGTTCAGAACTCCCGCTTCTGCATTCATACTGTCTAGAGTTCCTTTCTTCCGTAATAAAGGGCATGCGCAGTCAACTACTGCCA TATGCTGCACACATTGTCCGACTAGTTAAAGCGTATTTTAAACGATGTCAACTACCACATCTACGGCAAAAGGTGTATGCAATCGCAAAGATGCTGCTCA TATCTATGGGTGTTGGTGTAGCGATCTATCTTGCACAAGATGTTGTCAACAATGGCCTCACTGATCTGACTTCTGGTGCTGATAATACAATCAATGGAAA GTCAAATGTGTCTTCTCAGGCATGGTTGCAACCTTGTCCGAAAAAAAGAAAACACGGTGGTACAGATGCCATTGAACAGCAGGAAAACTCAGTAGCAATG GAATTCCCGTTAGTTGATAACAAGTCAGCTAGAGGTTCAGTCAAACTAGCTGCGCTTGATGCAATAGAAGCTCTTCTTACTGTGGGTGGTACTTTTAGAT CCGAGTCATGGCGATCAAGAATCGATAACTTGCTAATAAACATAGTGGAAAGTTGCTGTAGAGGTAGATGGGGTAATGATGGAAGGAGTTTCTTGTCAAA CGATCCAGATTTTCAACTAGCAGCATTGAAGGCACTTTTGGCATCTCTCCTTTCCCCAACTCGCTCTCGTCCTCCTCATTTAGCACAAAGTCTCGAGCTT TTCCGGCAAGGTAGACAAGAGATTGGAACAAGGATCTCCGACTTCTGTGCCCATGCTCTCTTAGCCTTGGAAGTGCTTATACATCCTCGTGCATTGCCAT TGATAGATTCACTGTCGAGTAACTCTCTTCACGGTTTCGAAGATCCTGCTGGTCAGAAGGCTAGCACCCCATTCCCCTTTAGCAATCACGAAGCGGAAAA TGGTGGAAATTTTGATCTAAGTGATGACATGCTATACCAAAGTTGGATAGATAACTCTAATAAGGGAACCGAGGGGTCGACAGAAATTGTAGAAAGACAG ACGAACGTTGAAGAAGAAGAAACCCACTCAGCAGCCAGAGTTCAACCAGGCAATGCCAAAGCCGATACGAGGATATCCAGCAACGATGAAATTATGGTCG ATTTGGTACAAGGTACTAATGCAACAGTCCTGCAGGTCAATGAATTTGGTTCAGCAGGAGCTGCTGCTAATGTTTCGGCAGTTGACAAAGTGGAGGTAAC AAGAGAGAGGAGCTTCGACAATGCTACTCACCCAATTAATAAAGATGCAAGATTAGGCTCTCCAAAGTATAGGACAGCCGCTGGCGCGGAATCGGATAAT GAGTCGACCGATTCACTTCCGGAAATCGTCTTTGCTGACCCAGATTCTGATTAG
AA sequence Show only first row Show all	>Lus10014364 pacid=23164693 polypeptide=Lus10014364 locus=Lus10014364.g ID=Lus10014364.BGIv1.0 annot-version=v1.0 MAASKSLRDMDDPELKPRLLRSLLKEDVPDEKKPFDNPSNLTRVVSRIQTHELLSECFSETMDQKLIGRWKSAVDDWVNRLLTLVSNLNMPDKSWAGICL LGVTSQECSSERFVASYIVWFDKLLVSMQSSADSQFIKVASCASMSDLITRLAGFPKLKKDGLSCAGKLIQPLLKMLDEDSPESVQEMALHMLSTIINLF PASLPRYYDSVEAAIASRMLSGNGSLSLQKKFASSLALLPKSRGDDESWLLLIRRILLLLNGYLTAVFDGLEEASKWEESVRLLVPPGEVPPQMIWGQKL VERVSGKDRRRSKLSSVLLLMHSCSMMLTNSHPNQVHVPVCSLLALVERVLMVHGSLPSATSFVIASEQDYVCSELPLLHSYCLEFLSSVIKGMRSQLLP YAAHIVRLVKAYFKRCQLPHLRQKVYAIAKMLLISMGVGVAIYLAQDVVNNGLTDLTSGADNTINGKSNVSSQAWLQPCPKKRKHGGTDAIEQQENSVAM EFPLVDNKSARGSVKLAALDAIEALLTVGGTFRSESWRSRIDNLLINIVESCCRGRWGNDGRSFLSNDPDFQLAALKALLASLLSPTRSRPPHLAQSLEL FRQGRQEIGTRISDFCAHALLALEVLIHPRALPLIDSLSSNSLHGFEDPAGQKASTPFPFSNHEAENGGNFDLSDDMLYQSWIDNSNKGTEGSTEIVERQ TNVEEEETHSAARVQPGNAKADTRISSNDEIMVDLVQGTNATVLQVNEFGSAGAAANVSAVDKVEVTRERSFDNATHPINKDARLGSPKYRTAAGAESDN ESTDSLPEIVFADPDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30240			unknown protein		Lus10014364 [exp]	0	1
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	2.8	0.9391
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	3.5	0.9323
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	4.7	0.9388
AT1G30240			unknown protein		Lus10026071 [exp]	7.5	0.9156
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	7.7	0.9195
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	8.7	0.9245
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	10.4	0.9154
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	10.7	0.9015
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	11.8	0.9115
AT5G17270			Protein prenylyltransferase su...		Lus10030019 [exp]	12.8	0.8849

Compare expression of checked genes

Lus10014364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.