Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12100 268 / 4e-81 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16640 170 / 9e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 164 / 5e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 157 / 9e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09820 156 / 2e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G26680 154 / 4e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 156 / 6e-41 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 149 / 5e-39 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64100 149 / 2e-38 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT3G22470 147 / 5e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023863 [exp] 512 / 6e-175 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008650 [exp] 411 / 2e-135 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012037 [exp] 170 / 5e-46 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 159 / 4e-42 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012068 [exp] 157 / 7e-41 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 156 / 9e-41 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 149 / 3e-40 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037319 [exp] 152 / 7e-40 AT4G11690 534 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035735 [exp] 151 / 9e-40 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249800 [exp] 340 / 5e-108 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G147700 [exp] 173 / 4e-47 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G032100 [exp] 166 / 2e-45 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 168 / 4e-45 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G166001 [exp] 162 / 6e-44 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 164 / 1e-43 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 160 / 7e-43 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050120 [exp] 152 / 6e-42 AT1G12700 295 / 3e-94 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 157 / 1e-41 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 156 / 3e-41 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014365 pacid=23143714 polypeptide=Lus10014365 locus=Lus10014365.g ID=Lus10014365.BGIv1.0 annot-version=v1.0 ATGACAGATGTTGCTCTGGGCATATTAAAGAAGTACCCAAGCTTGGCGTGGGAAAAGAGCAGCGAGAAGTGGAAGACGGCCATGGAGACGTTAGCCAACA TGCCAGACGAGTTTTGGAGTGGAACTCAGTTCGGAATCTCTGACGTTCCAAGAGCGGTACAATACGAAAAGGGAGCAGACTGCGAAGAGTCGAGCAACCG GCATTCACAACCCAAAGACTACGTCACTGCGTCCCATCATCATTTCCTCCTGAAGCGACTCTACAACCTCAAGCTCATGCACACTCACGCAGTCGAGCTC CCCCGTTTCCTGATCAATCAAGCCCTGGATTTAGATGGTCCTAACATTTTGAAAGTTCTCAAATCGTCCACTCAGACCGCGTTGAGGCTAGGGATTGTCG AGTTTGTGAAGGGAATCCTATCGAGTTATCCAAGGGCAATCTTGGATTTTGATGAGAAAAGGCATAGCTTATTCCATCATGCGGTCCTCCACCGGCAGTT GGAAGTGTTTGAGCTCTTGGCTCAGAGGATTTCCTTCCTCCCTGTGACCGGTTTCTCAAGGATGAAGTCGGAAACAAAGTCTTGCATTTGGCGGCCGAGA TTCGTCCTGTGGATAATGTCTGCGGTCCGACTATGCATATTCAACGCGAGCTCAAGTGGTTCAAGCTGTTTAGCAGGGAAGTTGAAAGATGCTTTAAGAT TCTTTGATGAGATGTTGAGAAGTGATATTGTCCCTTCTTTTGTGACCTACAATGCATTGATGAACGGTCTTTGTAAGCAAGGGAAGTTAACCGAAGCAGA AGACTTGCTTCAAGAGATTGCAAACCACGGTCTTGGTCCGGATGTTATAACGTACAACTGCTTGATCTCTGGGTATGCAAGTGCTGGCATGAGGCAGAAA TGTCTGGAGGTGTATGAAACAATGAAGAAGAACGGCATCAAACCTACTATAAGTACATTCCATCCCTTAATCAGTGAATGTGGCAAGGAAGGGCTGGAGA GTGTGGAGGAACTGTTTAACGAGATGCTGGTAATGAACTTGGTTCCGGACAGAGCCATTTACAATGTCATGATATTTTCTTTTGTGGAGTCTGGACTTGT GGAAAGGGCTGTTGGTTTACTCGACGAGATGCTAGCTAACGACATTCTCCCAGATAAGATGACCTATAACAGTCTGATTCTTGGACGGGTTAGAGAAGGC AAGTTCTCAGAAGTGAATGATCATGTTGCTGATATGAAGGCCAGAGGATTATCCCCGAAATCAGACACTTACAGTATACTGATTCAAGGATACTGTGACC AGAAAGATTTTGGTGGAGCGTACGCTTGGTACAGGGAAATGCTCGAGAATGGTATGTTACCAAACATTGGCAGTTGCAATGAGCTGATCTCTGGTCTTAC AGAAGAAGGGAAAGAGGTAGAAGCCCAGATGATTTTGGCAGAGTTGAACAGTAAAGGCGTGGATGATTCAAGCCCTGCCCAGGAGCTATCTGCAACATGA
AA sequence Show only first row Show all	>Lus10014365 pacid=23143714 polypeptide=Lus10014365 locus=Lus10014365.g ID=Lus10014365.BGIv1.0 annot-version=v1.0 MTDVALGILKKYPSLAWEKSSEKWKTAMETLANMPDEFWSGTQFGISDVPRAVQYEKGADCEESSNRHSQPKDYVTASHHHFLLKRLYNLKLMHTHAVEL PRFLINQALDLDGPNILKVLKSSTQTALRLGIVEFVKGILSSYPRAILDFDEKRHSLFHHAVLHRQLEVFELLAQRISFLPVTGFSRMKSETKSCIWRPR FVLWIMSAVRLCIFNASSSGSSCLAGKLKDALRFFDEMLRSDIVPSFVTYNALMNGLCKQGKLTEAEDLLQEIANHGLGPDVITYNCLISGYASAGMRQK CLEVYETMKKNGIKPTISTFHPLISECGKEGLESVEELFNEMLVMNLVPDRAIYNVMIFSFVESGLVERAVGLLDEMLANDILPDKMTYNSLILGRVREG KFSEVNDHVADMKARGLSPKSDTYSILIQGYCDQKDFGGAYAWYREMLENGMLPNIGSCNELISGLTEEGKEVEAQMILAELNSKGVDDSSPAQELSAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10014365 [exp]	0	1
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	2.4	0.8103
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10038852 [exp]	4.2	0.7565
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	7.9	0.7695
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10012464 [exp]	8.3	0.7601
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	9.8	0.7350
AT1G16740			Ribosomal protein L20 (.1)		Lus10029597 [exp]	14.1	0.7232
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	16.5	0.7456
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	17.0	0.7445
AT1G03510			Tetratricopeptide repeat (TPR)...		Lus10018543 [exp]	18.2	0.6902
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	20.1	0.7590

Compare expression of checked genes

Lus10014365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.