Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33940 188 / 7e-57 RING/U-box superfamily protein (.1) AT1G72175 116 / 1e-30 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 107 / 2e-27 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT5G55810 92 / 2e-21 ATNMNAT nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2) AT3G07200 45 / 2e-05 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027921 [exp] 236 / 1e-75 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10012062 [exp] 235 / 4e-75 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10009529 [exp] 138 / 1e-38 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10020349 [exp] 138 / 1e-38 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10023862 [exp] 119 / 4e-31 AT5G55810 336 / 5e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2) Lus10022774 [exp] 41 / 0.0008 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143900 [exp] 193 / 5e-59 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.019G078800 [exp] 129 / 2e-35 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.013G105400 [exp] 128 / 5e-35 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.005G032300 [exp] 100 / 5e-24 AT5G55810 337 / 4e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2) Potri.013G021900 [exp] 99 / 1e-23 AT5G55810 338 / 1e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10014366 pacid=23143752 polypeptide=Lus10014366 locus=Lus10014366.g ID=Lus10014366.BGIv1.0 annot-version=v1.0 ATGGAGGCTGAGGTTCATACTACTGAGAACTTTGGTGAAGGAAGAGAGAAGACGAAAGCAGCAGCAGGTGAGTCAACCAGAAGCCCTAGAGGAAATGTCG ACCGTAAAGTCTCTACTTGTCCTCCGGTCGACGATTGCTGCCCGATCTGCTTTGGAGAGTTCTCCGTCGCCTGTAAAGCTAACTGCGGCCACTGGTATTG CGGAAGTTGCATTCTCCAGCTGTGGAACTTCTCTGCAGGATCAAGACCCTGCAAATGCCCAATGTGTTCGTCCAACATCACCAATTTGACTCCGGAAGCA TCTTTCTTCAACCGACAAGATCTCGAAGCTCAGGAGGTTTTGCAGACTGTTGAGAGGTACAATCGCCTGTACATTGGAGGTGTACGCGGCATTGTTCAGA AAGTGCTTGAATCGCCATTGCTCATCAAGAGACTCGTTACCCGGATGATGGATCCCGATAGACATGTGTTTTATTTGTATAACGACGTGCAATTGCTTTC TCTGGCATTCACTCTTATATATAGCTTCTCCCCGTTCGAGTTTATTCCACTGAGAAGCTGCATTCTCCAGTTCTGGAACTACTCTGCAGCATCAAGACCT TGCAAATGCCCAATGTGTTCATCCAGCATTATCAATTTGACTCCAGAGGCTTCGTTATTAGACCGACAAGAGCGCGAAGTTACAGAGGTTCTGAAGAATG TTCAGAGGTACAATCGCCTATACGTTGGAGGGGCACGTGGCCTTGTGCAGGTAGAACAATTTTGGGGTACTAACAGCCGTTATATCAAACAGAAAGTGCG CGAATCCCCGTTATTGATCAAGCGAGTTCTGATGCGGATTATGGATCCTGATAGACCTGACTACATACAGGAAGCACGCATCTTTGCTGAAAATGTCCAG TATTCGATTTTGGTTCTCAACTGTGCGATTGTAGAACTGGTGAGAGATGCATTACAATCGGAGGGATATCGGGTGATTGCTGGGTATATGTCGCCAGTTA CCGATGCCTATAATAAGCCCGGTCTCATTTCTGCTGCGCATCGTTTGCGCATGTGTAATTTAGCATGTGAGAGCTCTGATTTCGTCATGGTTCATCCTTG GGAGAGAAATTTTGTGCCGGCTTTGTTCGACCTGTGTGAGAACAATGCTGATGTGTTGAAACGACCAATCAAAATTGCCTATTTATTCCGTCGCCGTCAT CGGTGTCATTCCACCACTTTGCCGCCGCCGTCGTGTTGCCACCGTGCTGTTGTGCCGCCTGTCCGCCGTGCCGCCGCCGGCCGCCGCTGA
AA sequence Show only first row Show all	>Lus10014366 pacid=23143752 polypeptide=Lus10014366 locus=Lus10014366.g ID=Lus10014366.BGIv1.0 annot-version=v1.0 MEAEVHTTENFGEGREKTKAAAGESTRSPRGNVDRKVSTCPPVDDCCPICFGEFSVACKANCGHWYCGSCILQLWNFSAGSRPCKCPMCSSNITNLTPEA SFFNRQDLEAQEVLQTVERYNRLYIGGVRGIVQKVLESPLLIKRLVTRMMDPDRHVFYLYNDVQLLSLAFTLIYSFSPFEFIPLRSCILQFWNYSAASRP CKCPMCSSSIINLTPEASLLDRQEREVTEVLKNVQRYNRLYVGGARGLVQVEQFWGTNSRYIKQKVRESPLLIKRVLMRIMDPDRPDYIQEARIFAENVQ YSILVLNCAIVELVRDALQSEGYRVIAGYMSPVTDAYNKPGLISAAHRLRMCNLACESSDFVMVHPWERNFVPALFDLCENNADVLKRPIKIAYLFRRRH RCHSTTLPPPSCCHRAVVPPVRRAAAGRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	3.0	0.8329
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	3.3	0.8833
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10042375 [exp]	3.9	0.8526
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	4.0	0.8546
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10030631 [exp]	6.3	0.8052
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	9.4	0.8563
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	10.2	0.8560
					Lus10029097 [exp]	10.4	0.8117
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	10.7	0.8015
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	11.5	0.8398

Compare expression of checked genes

Lus10014366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.