Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36490 493 / 1e-147 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 345 / 2e-97 DML2 demeter-like 2 (.1) AT5G04560 344 / 7e-96 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT4G34060 254 / 1e-69 DML3 demeter-like protein 3 (.1.2) AT4G04957 71 / 1e-14 Domain of unknown function (DUF1985) (.1) AT3G47830 72 / 4e-13 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023864 [exp] 3089 / 0 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10027713 [exp] 1143 / 0 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 1142 / 0 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10034120 [exp] 76 / 6e-14 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 59 / 4e-08 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116000 [exp] 414 / 4e-118 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.010G234400 [exp] 367 / 7e-103 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 365 / 3e-102 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.001G150001 [exp] 277 / 3e-75 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.015G071300 [exp] 75 / 5e-14 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10014367 pacid=23143692 polypeptide=Lus10014367 locus=Lus10014367.g ID=Lus10014367.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGGGGAGGAAGAAACGATGCTGCAGCGTCCAGGCCAATCCAGCCGGCGGTGATCTACACAGATAGGCTGGGGAATCCATTGTTGCAGCAGC AGCAGCAGCAACCCACCAATTGGCCTCCTGCACCGGCTAATTTTTCGTCAGGGTTTATGCATGCTGATGCTCCTGCTGCTCATATGGACAGATGGAGGGA TGTTCCTTTTCAGTGTCTCCTGGCTCTAACAGAAACAGCATCATCAATACCCACTGTTCCTTCATGGGGAGGAATAGACTTAAACTTTGATTATGGGTAC CAAGATCCAATTCCTCAACATTATGGCCACAGCTTACCTCAAGGAAGCATGGCCGAGTCGTCCTTGAGTCTTGGATTTGCTCCGGTTACGCCGCAGAAGG CAATGTTGCAGAGTCAACAAATTAATGGAAGCCTTGAGCTTGCACCTGCCATCGCAACTGAGGAGGAGGTGAGAGTTGAGGGCGTACAAGATTTGCTTTG TCAAGAAACACTTATTAACAGAGCTGATGCTGTCATTACTCCGGATGAAAACGATGGAAGGAACTTGGAATCTACTCCAGCAGCTAGCTTGACATGGGCT AATCACAACCGTGAGAAAGTGGACTTCAGTTTAATCGACTTGAACAAGCTTCCGACACTGCCAACGCTGAAGCGCAAGGCTAAGAGGAAGAAGCACGTAC CTAAGGTTCTCGTGCTCGTGGATGGAAAACCAAAGAAGAGGAAACAGCCAGAAACAACTCCAAAACCGCCCAAGAAAAACAGCGAGAAGCAAGGTCTACC TACCGAAGCTTCATCTTCTCGAACTGCTGCATTTGAGATGAATGATGGAGTTGCATTTAAAGAAGGAACTCCGAGGAATATAAAGAAGTACTCACGGAGA GGTGTTAGTAAAACCATAACAGGCATTGATTCAGCAGGAGTTCAGGAGGCCAATAATACACCGCCACCAGGAGAAGCAACCGGAGAGTCTGCAGATCCGC AACGTCCTCCACCTGCAAAAAGGTCATGTAGAAGAGAGTTAAGCTTTGACTTGGAAGAAGAACCAGCAGGTCAAAGCTATGCACCCAGCTGTCTATCTCC CAAACGTGTGACGCGCAGCCAATCAGCATCCATCGAAGTGAAGATGCAGAAAACATCGGCAGGAGCTCCGTACGACTTCAACAGTTCTGTTAATGAAATG CTTAGAAGTTATTCCTCCAAGGCAGGAGAGGCAAGTGGATCAGTGGACAAGCATTCCAGTCTTGCTGAATCAGCCACTGGATTCTGTACTGGTTTGTCTT CATACTCGACATTACCTTGGGCGCTAATTCCAGTATGCCGGAAGAAGAGGACCAAAAAAAGCCAAAACTCATCGGTCTCAGGTGCACCAGTTCATTCAGC TTCCAAAAAGGTCATAACAAGTACTGCCACACGAGTTTTTCCGGCTGCTGAAAAGGCAATCTCCAATGCTGCAACAGCAAGCATCAACTACTTGACTTAT GCTCATTGTGCTGGAAATGGACTTCCGGTAAGTCCCAACGGATCTAGCCTTCGGTACAAACTGCACAATTTCAGTCCCTTATATGAGACTGAGATGTTGT CAACTAAAAGAAGGTCTAGAGCTCCTGTTCGGGTTCGAGATTTGGCTTCTCTTATCAGTATACCTCCTCTGACTGCTCAAACACCAACGACTTGTGGTAA CCGACATATTCAGAACTTTGATAGGCTTGATCGAGGTTTGGCCTCTCATGCCAGTATCCCTCCTCTTCAGACTGGCCAAATACCAACGACTTTTGGTAAC CGACATATGCAGAACTTAAACAGGCTTGATCGAGATTTGGCTTCTCTTGCTGGTATCCCTCTTCAGAATACTGGCCAAATACCGACGACTTGTGGTAACC GACATATTCAGAACTTAAGTAGCTTTGATATGCGTATGGAAGCACTAGTTGCCGATGGTAAAGCAACCTTGGATGCACTAGTCACAGGTGGTGGTAAAGA AACCTTGAAGACTGCGAAAATAAGCAAAAGGGATTCTCAAACTAAATATGCATCCTCAAAGGTGAATGACAGAAGACCACAAGGCATTATGGTTCCATTG GTTCAGAACAAATTCCTACATCCGGCTTCAGGTTCCGTGGACATTCTGTTTAACCAATTCTTACATGTGGATGTCTTGGCTGAGCAGTTAAAGCACCTTA ACATTAACAGGGGAAACCTCAAGATTGCTTGTGCTCAGAGGAATCAACTTGTTCCTTACAATGCTGGAAAACAAAAGCAGACCGCAATGGTTATATACAC AGGGGACGATAGGATTATTCCATTTCAACCACCGAAAAAGAAGCGACCAAGGGCAAAGGTCGAATTAAATGAGGAGACACTTAGAGTGTTTAATCTACTA TTAAAAGACATAGACAGCGAAGGTATTGATGGAACAGATGAAGCAAAGAAAAAGTACTGGGAAGATGAAAGGAAGATCTTCCGTGGACGAACAGACTCCT TTATAGCACGAATGCATCTAGTACAAGGAGATAGGCGTTTCACTAGGTGGAAGGGATCAGTTGTGGACTCAGTTGTTGGGGTATTTCTAACTCAGAACGT CTCAGATCATCTTTCCAGTTCTGCATTTATGTCAATGGCTGCTCGTTTCCCAATTAAGAGAGAGGAGACGCCATGCCGGGATGAAGGAATGCACTGCGTA GTGGCTAATCCAATAGTTTCTATGCCAGATGAGGAGGCCGTGAACTTGGATGAGATGTCAAATCAATCAGTTTCTGACAGAAGTTCCATAACTCTTCATG ATCCTCAGATTGAAGAAGCAGAAGTTGTGCATACCATAGATTCCACAAGAAGCATGAGTAGTGATACTAACTTCGTACCTGGTGAAGAGAACTACAATGA ATTAGTGATCTCTTCTCAGAATTCAACAGTTTCATCTCAAAACTCAAATTCACCAGTTAGTCAAACGGTTGACAGAAAAGATTCATCCTCAGAGACCAAC TCACGGGAATTGGATCCTACTGATGCAGCCCAAATCAACAGCTTTAATGTAGTTAATTCTTTTCTTGAGCTCCTACATATGGCTCAGTCTGGATCAAGCA TGCCGCACGAAGTTCCCAAATTTTTGCATCAAAGTCCGAACGAGACTGCCAAAACATCAACCCTGGGTATCCCGACTCAAAAAGAATCTGTTGAACCGAA GGAACTTGCAGACGAACCACTGAAACAGTTTGTTGGTAACGTAATGCAGCAACCGGAACAAGTTGCAAACCGTTCAGAAGTGATGTTTGATATTGTGGAA AGTAGCAGGGAGAAGGAAAATGTTTCAGAGAAAACGACGGCTTCAAATATGATTAACCATCCCAATTCGAGAGTTAAGGGTGTCAAAGACATCGATGCTG CTCGGAGAAAGGCGAAAAGTAGAAGGGTTGGCGATGAAATCAAAGATGCTGACTGGGAGGCACTGAGAAGAAGTGCCAAACAAAGTGGGCAAAAAAATAA GAGGGCAGAGAACGCAAAGGATTCGGTGGATTGGGAAGCTGTAAGATGTGCAGGTGTGAATGAGATTGCTGAGACAATAAAAGCACGTGGGATGAACAAC ATGCTTGCAGCACGCATTAAGGAGTTTCTTGATAAAGTGCTAACCTATCACGGAAGTGTTGATCTGGAATGGTTAAGAGATGTTCCTCCCGATAGAGCAA AAGAGTACCTGCTAAGCTTTAACGGGCTGGGGTTGAAAAGTGTGGAGTGCGTACGGCTTTTGACGCTTCATCACCTTGCATTTCCGGTTGATACCAATGT TGGACGCATAGCTGTGCGACTTGGATGGGTCCCACTGCAACCATTACCTGAATCGCTACAATTGCATCTACTAGAAATGTACCCTATACTGGACACAATT CAAAAGTATCTGTGGCCTCGATTGTGCAAACTTGATCAGAAAACACTGTATGAACTGCATTATCAGCTTATCACGTTTGGAAAGGTGCGTGTCATTCCCA CTTATGTCGTTGATGTCGGTAATCCATTTGCTTTTCTGTTGGAGTTTAAAATAAAACATGAGATCTTTCAACTTGATGCACAGGTTTTTTGTACAAAAAG CAAGCCGAACTGTAATGCTTGTCCAATGAGAGGAGAATGTAGACATTTTGCCAGCGCATTTGCAAGTGCAAGACTTAGCCTCCCGGGACCAGAGGAAAAA AGAATCGTCACTGCAACTCAAGAAAGGCCACCCTTCCCAAGACCGATGATGCCAAATGTTCAAAGATGTCCACCTTTATTAACCATATGTGAACAGCCAA ATCAGCCAACGATATCTCTACTACCTTCTACTTCATCAGCACTACCGTCAACTTCATCAGCACCTGAACAAGAAAAACAACAGTTGACGTTAAGTTCATC AGTGCCTGAACAAGGAAAACAACAGTCGACGTCAAATCCATCAGTGCCTGAACAAGGAAAACAACAGTCTACGTCAGGTTCGTCTATGCGTGAACAAGAA AAACGGCAACCGACGCCAAGTTCATCTGTACCCGAACAAGAAAATCATCATTCGGTTGTGACGGAACAGCCAGTAGCTAATTTAAGAGTCAGCCATGAAC CGATTATCGAGGAACCATTATCACCCGAGCCATTCATATTACCTGACATTGAAGATTTCTTTTACGAGGATCCTGACGAAATCCCAGTTATCAAGTTGAA TGTTGAAGAGCTTGCTCAGAATATAGAGACATATCTCAAGCAACAGAACTTGGATATTCGTGAAAGTGACATGTCATTGGACTTAGTTGCGATGGCTACT GAAGCTACGTACATGCCTCCCCCCAAGCTTAAGAATATTAGTCGGCTACGAACGGAGCACCAAGTATACGAACTTCCAGATCGCCATCGTCTCCTAGAAA AGTTTGACAAGCGGGAATATGACGACCCATCTCCATATCTCCTTGCAATATGGACGCCAGGCGAAACAGCAGACTCTGTCTCACCTCCGGAAAGAAGATG CACCTCACAGTCAAATGGTAGATTATGTGAGGAGGGAACGTGTCCCTTGTGCACCAGCTACTTGGAAGCAAAACGTCAAATAATCAGAGGAACTATTCTG ATACCCTGTCGAACAGCAATGCGAGGAAGTTTTCCCCTCAATGGCACATACTTTCAAGTCAATGAGGTATTTGCTGACCATGAGAGCAGTCTCAACCCAA TTGAGGTACCAAGATCATGGCTCTGGAATCTACCAAGAAGAACGGTCTACTTTGGAACATCTGTGCCGACAATATTTAGGGGTTTAACGACAGAGGAAAT CCAACAATGTTTCTGGAGAGAGAGAGACGAGAGCCCCACGTCCACTGATGGCCAGACTGCACTTTCCAACCATAGACTGCACCTCCCAACCAGCAAGTTG AAGCCTAAAGGAAAAAATGTAGCTGATGATGAGTCCTAA
AA sequence Show only first row Show all	>Lus10014367 pacid=23143692 polypeptide=Lus10014367 locus=Lus10014367.g ID=Lus10014367.BGIv1.0 annot-version=v1.0 MEERGGRNDAAASRPIQPAVIYTDRLGNPLLQQQQQQPTNWPPAPANFSSGFMHADAPAAHMDRWRDVPFQCLLALTETASSIPTVPSWGGIDLNFDYGY QDPIPQHYGHSLPQGSMAESSLSLGFAPVTPQKAMLQSQQINGSLELAPAIATEEEVRVEGVQDLLCQETLINRADAVITPDENDGRNLESTPAASLTWA NHNREKVDFSLIDLNKLPTLPTLKRKAKRKKHVPKVLVLVDGKPKKRKQPETTPKPPKKNSEKQGLPTEASSSRTAAFEMNDGVAFKEGTPRNIKKYSRR GVSKTITGIDSAGVQEANNTPPPGEATGESADPQRPPPAKRSCRRELSFDLEEEPAGQSYAPSCLSPKRVTRSQSASIEVKMQKTSAGAPYDFNSSVNEM LRSYSSKAGEASGSVDKHSSLAESATGFCTGLSSYSTLPWALIPVCRKKRTKKSQNSSVSGAPVHSASKKVITSTATRVFPAAEKAISNAATASINYLTY AHCAGNGLPVSPNGSSLRYKLHNFSPLYETEMLSTKRRSRAPVRVRDLASLISIPPLTAQTPTTCGNRHIQNFDRLDRGLASHASIPPLQTGQIPTTFGN RHMQNLNRLDRDLASLAGIPLQNTGQIPTTCGNRHIQNLSSFDMRMEALVADGKATLDALVTGGGKETLKTAKISKRDSQTKYASSKVNDRRPQGIMVPL VQNKFLHPASGSVDILFNQFLHVDVLAEQLKHLNINRGNLKIACAQRNQLVPYNAGKQKQTAMVIYTGDDRIIPFQPPKKKRPRAKVELNEETLRVFNLL LKDIDSEGIDGTDEAKKKYWEDERKIFRGRTDSFIARMHLVQGDRRFTRWKGSVVDSVVGVFLTQNVSDHLSSSAFMSMAARFPIKREETPCRDEGMHCV VANPIVSMPDEEAVNLDEMSNQSVSDRSSITLHDPQIEEAEVVHTIDSTRSMSSDTNFVPGEENYNELVISSQNSTVSSQNSNSPVSQTVDRKDSSSETN SRELDPTDAAQINSFNVVNSFLELLHMAQSGSSMPHEVPKFLHQSPNETAKTSTLGIPTQKESVEPKELADEPLKQFVGNVMQQPEQVANRSEVMFDIVE SSREKENVSEKTTASNMINHPNSRVKGVKDIDAARRKAKSRRVGDEIKDADWEALRRSAKQSGQKNKRAENAKDSVDWEAVRCAGVNEIAETIKARGMNN MLAARIKEFLDKVLTYHGSVDLEWLRDVPPDRAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPILDTI QKYLWPRLCKLDQKTLYELHYQLITFGKVRVIPTYVVDVGNPFAFLLEFKIKHEIFQLDAQVFCTKSKPNCNACPMRGECRHFASAFASARLSLPGPEEK RIVTATQERPPFPRPMMPNVQRCPPLLTICEQPNQPTISLLPSTSSALPSTSSAPEQEKQQLTLSSSVPEQGKQQSTSNPSVPEQGKQQSTSGSSMREQE KRQPTPSSSVPEQENHHSVVTEQPVANLRVSHEPIIEEPLSPEPFILPDIEDFFYEDPDEIPVIKLNVEELAQNIETYLKQQNLDIRESDMSLDLVAMAT EATYMPPPKLKNISRLRTEHQVYELPDRHRLLEKFDKREYDDPSPYLLAIWTPGETADSVSPPERRCTSQSNGRLCEEGTCPLCTSYLEAKRQIIRGTIL IPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPIEVPRSWLWNLPRRTVYFGTSVPTIFRGLTTEEIQQCFWRERDESPTSTDGQTALSNHRLHLPTSKL KPKGKNVADDES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	0	1
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	1.7	0.9498
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	2.6	0.9251
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	5.7	0.9248
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	5.7	0.9178
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	7.4	0.9282
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	9.2	0.8824
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	9.2	0.9377
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	15.1	0.9293
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	15.3	0.9348
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	15.3	0.8963

Compare expression of checked genes

Lus10014367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.