Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 967 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 622 / 0 Protein kinase superfamily protein (.1) AT1G73660 377 / 9e-116 protein tyrosine kinase family protein (.1) AT1G18160 374 / 6e-115 Protein kinase superfamily protein (.1) AT5G11850 369 / 3e-114 Protein kinase superfamily protein (.1) AT1G08720 370 / 8e-114 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G49470 336 / 5e-106 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 330 / 4e-101 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06620 331 / 9e-101 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 326 / 6e-99 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023865 [exp] 1536 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10043428 [exp] 715 / 0 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 608 / 0 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 379 / 4e-118 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 379 / 5e-117 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10004124 [exp] 374 / 8e-116 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 372 / 1e-115 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10028169 [exp] 362 / 2e-114 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10042868 [exp] 366 / 4e-112 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095750 [exp] 1063 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 1048 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G025800 [exp] 741 / 0 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G234700 [exp] 740 / 0 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 627 / 0 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 420 / 2e-132 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 389 / 6e-120 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 374 / 3e-115 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 376 / 4e-115 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.013G034800 [exp] 374 / 4e-115 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10014368 pacid=23143734 polypeptide=Lus10014368 locus=Lus10014368.g ID=Lus10014368.BGIv1.0 annot-version=v1.0 ATGGAAATGCCCGGCCGAAGATCCAACTACAGTCTCCTAAGTCAGTACCCGGACGAGCAGCTGTCGGCGGGGACTCCGCCGCCTCCCTATTACGACTCCT CCTTCTCCAGCGACTCCAAGGGTAACAGGTTGAAATCGGATAGAGTCTTCGATTGGGAAAGCGGCGGGGATCATAGGCTGAATCAGACAACGAATAACAA CAACAACAATAGCAACGGGAATCGGATTGGTGGGAATCCGAATTTGTACTCGTCGATCGGCCTGCAGAGGCAGTCTAGCGGGAGTAGCCTCGGGGAGAGC TCGTTGTCAGGGGAGTATTACGCGGCGACGCTTTCCACCGGCGGCGCGAATGAGATTGAGGCTTATGGATACATGCATAGAGGGATGGATGCGACGGCGG GGACCACGGTGGGACCTGGATCGTCCGGGAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTACCAGCTGCAGTTGGCGTTAGCATTGAGATTATCGTCTGA GGCTACTTGTGCTGATGATCCCAATTTTTTGGATCCAGTGCCTGATGAATCTGCTTCTCGGTCTTCCAGCTCCAACTCCGCTGAGACCCTGTCTCATCGC TTTTGGGTGAATGGTTGTTTATCATACTTTGATAAGATCCCAGATGGATTTTACCTTATTCGCGGGATGGACCCATATGTATGGTCTGTGTGCACTGATT TTCAAGAGAATGGCCGTATTCCGTCGATTGAAACACTCAAGTCTGCTGATTCCAGTGCTGATACTTCATTGGAAGTGGTTTTGATTGATAGACGTAGTGA CCCAACCTTGAAAGAACTTCAAACCAGAGTCCATAATATATCCTGCAACTGTATAACCACAAAGGAGGTTGTTGATCAACTGGCTAATCTTGTATGTAAC CGAATGGGGGGTTCAGCGACTACAGGAGAAGATGAATTCATGTCCATATGGATGGAGTGCAATGACGATCTAAAAGATCGCTTGGGATCGACTGTTGTGC CTATTGGCAGCTTATCCGTTGGCCTCTGCAGACACCGAGCCTTGTTATTCAAAGTGCTTGCTGATGCAATAGATTTACCATGTCGAATTGCAAAAGGCTG CAAATATTGCAACAGAGATGATGCATCCTCCTGTCTTGTTCGATTTGGGCCTGACAGGGAGTACTTAGTCGATTTGGTAGGGCAGCCTGGTTGTCTATCT GAGCCTGATTCACTGCTAAATGGTCCTTCTTCCATCTCGATATCTTCGCCATTACGCTTTCCACGGACCAAAGCAGCTCAACATGGCATTGATTTTAGGT CACTTGCCAAACAGTACTTCTCAGACTGCCAGTCACTGAATATTGTGTTTGATGATATTTCAGCAGGTGATTTGACTCGGGTTGGATATAAGTTTTCTTT TATGGTTTTCCTTGATCGTTGCCTAATAATGCTTTACACAGCAGGCGTTCCCATTACTGATGAAGACTATAAGTTCCCCAACAGCAATGAAGTTTCTCAA CCGCTTCTGCCCCCTAGAGTTGGTCGTACTGGTGGTCAAGATAAAAATTCCCAACCCCCGAAAGTGTATACCCCTCCACAAAGTATCCAACCATCAAACT TGCTCAAAGATCATACCGCAAATAAGCATTTGCCTCCCACTGGGCAACATCTTTTATCTGTACCTGCTCAGAGATTCGAAGCTAGTTCAGATTCAAGGTT CAATGAAGGAAGTCAATTGATTTCTGGTAGACCAAGCAAAGAACTATCGCTTGAGGTTGAGGATTTTGACATCCCATGGAGTGATCTCGAGTTAAAAGAG AGGATTGGAGCAGGTTCTTTTGGAACTGTCCTTCGTGCTGATTGGCATGGCTCAGATGTTGCTGTGAAAATTCTCATGGAACAAGATTTTCATGCGGAGC GCTTCAATGAATTCTTGCGAGAGGTTGCAATTATGAAGCGCCTAAGACATCCAAATATAGTTTTGTTCATGGGTGCTGTTACTAAACCACCAAATCTGTC TATTGTGACAGAATACTTATCAAGAGGTAGCTTATATAGGTTACTGCACAAGTCTGGTGCACGAGAGGCCTTGGATGAAAGACGTCGGTGGAATATGGCA TATGATGTGGCAAAGGGAATGAATTATCTTCATAAGCGTAATCCTCCTATCGTACATAGAGACTTGAAATCCCCCAATTTGTTGGTTGATAAAAAGTACA CAGTGAAGGTTTGTGACTTTGGTCTTTCTCGGTTCAAAGCAAATACGTTTCTGTCATCAAAGTCGGCTGCAGGGACACCTGAGTGGATGGCCCCTGAAGT TCTACGTGATGAACCATCAAACGAGAAGTCGGATGTGTACAGCTTTGGCGTAATTCTGTGGGAGCTTGCGACGTTACAGCAACCCTGGGGCAATTTAAAC CCAGCGCAGGTTGTAGCTGCAGTTGGTTTCAAATGCAAAAGGCTCGAGATTCCCCGTGATGTAAATCCTCTAATAGCAAACATGATCGAGGCTTGTTGGG CTAACGAACCATGGAAACGACCTTCGTTTGCCAACATCATGGAATCCTTAAGGCCATTGATTAAACCTCCGACTAATCCACCAACCGCTCGTTCAGACAT GTCGTTACTTCCTTGA
AA sequence Show only first row Show all	>Lus10014368 pacid=23143734 polypeptide=Lus10014368 locus=Lus10014368.g ID=Lus10014368.BGIv1.0 annot-version=v1.0 MEMPGRRSNYSLLSQYPDEQLSAGTPPPPYYDSSFSSDSKGNRLKSDRVFDWESGGDHRLNQTTNNNNNNSNGNRIGGNPNLYSSIGLQRQSSGSSLGES SLSGEYYAATLSTGGANEIEAYGYMHRGMDATAGTTVGPGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPVPDESASRSSSSNSAETLSHR FWVNGCLSYFDKIPDGFYLIRGMDPYVWSVCTDFQENGRIPSIETLKSADSSADTSLEVVLIDRRSDPTLKELQTRVHNISCNCITTKEVVDQLANLVCN RMGGSATTGEDEFMSIWMECNDDLKDRLGSTVVPIGSLSVGLCRHRALLFKVLADAIDLPCRIAKGCKYCNRDDASSCLVRFGPDREYLVDLVGQPGCLS EPDSLLNGPSSISISSPLRFPRTKAAQHGIDFRSLAKQYFSDCQSLNIVFDDISAGDLTRVGYKFSFMVFLDRCLIMLYTAGVPITDEDYKFPNSNEVSQ PLLPPRVGRTGGQDKNSQPPKVYTPPQSIQPSNLLKDHTANKHLPPTGQHLLSVPAQRFEASSDSRFNEGSQLISGRPSKELSLEVEDFDIPWSDLELKE RIGAGSFGTVLRADWHGSDVAVKILMEQDFHAERFNEFLREVAIMKRLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGAREALDERRRWNMA YDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRFKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN PAQVVAAVGFKCKRLEIPRDVNPLIANMIEACWANEPWKRPSFANIMESLRPLIKPPTNPPTARSDMSLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	1.0	0.9433
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	2.4	0.9390
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	4.2	0.9157
AT5G18420			unknown protein		Lus10008554 [exp]	6.7	0.9177
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	11.5	0.9235
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	13.9	0.8981
AT2G05710		ACO3	aconitase 3 (.1)		Lus10040070 [exp]	18.4	0.8961
					Lus10041915 [exp]	19.6	0.9093
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	22.4	0.9193
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	23.0	0.9103

Compare expression of checked genes

Lus10014368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.