Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03720 307 / 5e-101 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT1G32330 205 / 8e-61 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G22830 191 / 3e-56 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT4G17750 192 / 1e-55 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 185 / 1e-54 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G02990 186 / 7e-54 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 187 / 9e-54 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G51910 171 / 7e-50 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G54070 171 / 3e-49 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT5G43840 165 / 1e-47 HSF AT-HSFA6A heat shock transcription factor A6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023866 [exp] 696 / 0 AT5G03720 299 / 9e-98 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Lus10011065 [exp] 206 / 4e-61 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 204 / 3e-60 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10000312 [exp] 203 / 4e-60 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10040091 [exp] 199 / 2e-58 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10039376 [exp] 192 / 8e-57 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 192 / 2e-56 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039134 [exp] 182 / 3e-53 AT2G26150 292 / 7e-97 heat shock transcription factor A2 (.1.2) Lus10013797 [exp] 180 / 1e-52 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115700 [exp] 373 / 4e-125 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Potri.002G048200 [exp] 200 / 3e-60 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 200 / 4e-60 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.003G095000 [exp] 204 / 5e-60 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.001G138900 [exp] 203 / 9e-60 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.008G157600 [exp] 197 / 4e-59 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 188 / 2e-55 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 185 / 5e-54 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.013G079800 [exp] 186 / 3e-53 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.017G059600 [exp] 172 / 3e-48 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10014369 pacid=23143686 polypeptide=Lus10014369 locus=Lus10014369.g ID=Lus10014369.BGIv1.0 annot-version=v1.0 ATGAACCCAGAAGAAGAGTACTACTCGGAATCACCTGACGCCAGCTCAATCCCCGTGTGCTCAGTTATGGAGGAAATGCCCATTCCGGCTTCTCCATTAA TGGCCTTCGAGGATTTCTCGCAGGCGTTCGAGTTCAAAGCTGAGCCATTAATCCCTCCGGTTGCCATTATTCCTCAGCCGCTTTCGATTCTGCAGGAAAT CCCGGTTCCGCCGTTCCTGTCCAAGACATTCGACCTGGTGGATGATCAGGGACTGGATCCCGTGATTTCGTGGGGCGGAAGGGGAGAAAGTTTCGTGGTT TGGGATCCAGTGGAGTTCTCCAGAACAGTACTCCCTCGCAATTTCAAGCACAACAATTTCTCCAGCTTTGTTCGCCAGCTCAATACTTATGTGGGTACTT CTGCTGGTAACTGCAGCAGCTTTGCTGAGCAAGCTTCTGTGGGGTTCCGCAAAGTGGATGCTGACAAGTGGGAGTTTGCTAACGAAGGCTTTCGACAAGG TCAGAGGCACCTTCTCAGGAACATTCAAAGGCGCAAGTCGCCGCAGATGAGTACCAACGTTGTCGAATCGGGGCTGGAGACCGAGGTGGAGAGATTGAGG AAGGAGAGGAGTACAATGATGCAGGAAGTTGTGGAGCTCCAACGGCAGCAAAGAGGATCTGTGAAGCATATAGAGACTGTTAACAAAAGGATTCAAGATG CAGAACAAAGGCAGAAGCAGATGCTTTCATTCCTAGCTAAGTTGTTCCACAACCGAGCATTCCTAGACCGTCTGAAGCAAAGCAAAGAGGAAAAAGTGTT AGGGGCGCCTTCTTCGAGGACGAGGAAGAAATTCATAAGACACAACCAACCCGAGTCATATACTACTCAAGGACAGATTGTACAGCAGCCACCTGAATAT GCATTGGAAGGGATAGTAGAAGAAGGTTTTCCATTTGAAATGGATACTTTTGTATCAGATGAACTCATCATCCCTCAAGAGCAGATTGAAGAAAAGGCAA CGACTTTGCAAAGCGAGGAACTTCATTGTAAAGGGAAACATGTAATGGATCCACAACAACAAGAACTTGGTCCGGAATATTTGGTCTCCTTCCCTGATGA TTTTGGAATGCAGGACTTTCCAGCAGCTTCTTCTGGCTTTGAAACGGAGCTATGGAACGATGTCGTCCGGTATGATGTGCCGGAGTTTGGAGGAGTTGCA GGTGGGTTCTCTGACATCTGGGACTTAGGTTCTACACAGGGAGCAGGAAGTTCAGGTGTTGACAAGCAGCTAGCTGATGAAAGCCTACTTACTGAGCCTC CTACTGATAATAGTTCTGGTCTGAACAACTTAGATGCATAG
AA sequence Show only first row Show all	>Lus10014369 pacid=23143686 polypeptide=Lus10014369 locus=Lus10014369.g ID=Lus10014369.BGIv1.0 annot-version=v1.0 MNPEEEYYSESPDASSIPVCSVMEEMPIPASPLMAFEDFSQAFEFKAEPLIPPVAIIPQPLSILQEIPVPPFLSKTFDLVDDQGLDPVISWGGRGESFVV WDPVEFSRTVLPRNFKHNNFSSFVRQLNTYVGTSAGNCSSFAEQASVGFRKVDADKWEFANEGFRQGQRHLLRNIQRRKSPQMSTNVVESGLETEVERLR KERSTMMQEVVELQRQQRGSVKHIETVNKRIQDAEQRQKQMLSFLAKLFHNRAFLDRLKQSKEEKVLGAPSSRTRKKFIRHNQPESYTTQGQIVQQPPEY ALEGIVEEGFPFEMDTFVSDELIIPQEQIEEKATTLQSEELHCKGKHVMDPQQQELGPEYLVSFPDDFGMQDFPAASSGFETELWNDVVRYDVPEFGGVA GGFSDIWDLGSTQGAGSSGVDKQLADESLLTEPPTDNSSGLNNLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	0	1
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	1.0	0.9690
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	1.4	0.8661
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	3.9	0.8541
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	4.2	0.8272
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	4.9	0.8278
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	5.3	0.8436
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	5.5	0.8420
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	10.2	0.8335
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	11.0	0.8001
AT4G27890			HSP20-like chaperones superfam...		Lus10027048 [exp]	18.0	0.8018

Compare expression of checked genes

Lus10014369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.