Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03700 438 / 2e-150 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 85 / 2e-17 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 85 / 2e-17 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 85 / 4e-17 S-locus lectin protein kinase family protein (.1) AT4G32300 85 / 4e-17 SD2-5 S-domain-2 5 (.1) AT1G16905 81 / 5e-16 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78830 74 / 7e-14 Curculin-like (mannose-binding) lectin family protein (.1) AT1G65800 72 / 6e-13 ARK2 receptor kinase 2 (.1) AT1G11280 70 / 2e-12 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G00340 70 / 2e-12 RLK4 receptor-like protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023868 [exp] 840 / 0 AT5G03700 458 / 3e-158 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 82 / 4e-16 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10043391 [exp] 81 / 1e-15 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10000579 [exp] 78 / 4e-15 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 75 / 8e-14 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 72 / 8e-13 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10029802 [exp] 70 / 2e-12 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 70 / 3e-12 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 69 / 7e-12 AT4G21380 952 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G016900 [exp] 441 / 2e-151 AT5G03700 479 / 2e-166 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.019G013797 [exp] 94 / 3e-20 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G005900 [exp] 88 / 2e-18 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 87 / 2e-18 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 87 / 3e-18 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 81 / 3e-16 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 79 / 2e-15 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.006G053700 [exp] 78 / 6e-15 AT2G41890 765 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.018G027300 [exp] 77 / 8e-15 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.001G391300 [exp] 74 / 7e-14 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0168 [flax] [poplar] PAN PF00024 [flax] [poplar] PAN_1 PAN domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014371 pacid=23143668 polypeptide=Lus10014371 locus=Lus10014371.g ID=Lus10014371.BGIv1.0 annot-version=v1.0 ATGAAACCACGTCCGATTGGTTTAACCGCCGCAACTCGGTTCCTTTCCCTTCTACTCATCTTCATTTCCTCCTCCTCCGCCTCCGCCGCACAAACCGAGC TTCTACCGGGGTTCAGAGCAGCTCCAGATCCTTCCACGTCATCCTTTCAACCGATTCTCAATGACCCATCTGGAAATTTCTCACTCGGTTTCCTCCGACT CGACTCGGACCACCAGTTCGCTCTCTCAGTCGTCCACATCCCTTCCCTCCAACCAATCTGGCAGCCCAACCCAACCCGGTCCGACCAGACCACGACCCAG ACTCAACTCTCCTTCAATGGCACCCTCGTAATTTCCGACTCTCGCTCCCGCATTCTCTGGTCCACCGCCACCGGTTCTAATACTGCAGGCGACAGAGTCG TTTTACTCAACAACTCCAACTTACAAGTGCTGCGAAACGACGCCGTTGTCCTCTGGCAGAGCTTCGACTCCCCAGCAAACACCCTCGTCCAGGGCCAAAA TTTCACTTCTGCCACTTCCTCCGACGGCCGTTACGCCCTCCGATTGGGGTACGATTTCATGGCCTTATACGCAGACTTCTCCGGAAAGGGCGATCCCGAT CGAATCTACTGGAAGCACAAAGCCCTCGAGGCGCGTGCCGACGTCGTACCGGGTCAGGGCCCGATCCACGCGCGTGTGGACCCCATCGGGTTCATCGGGA TGTACCAATCTGTAAACGGCTCCGTCCCAATCGACGTCCAGGCTTTCAACAGCTTCCGCCGTGAAGTCAACGGGTTCCACATCGTCCGTCTGGAAGCCGA CGGAAACCTGAAGGCGTACAATTGGGATGGAAGCAACTGGGTCCTCGATTACCAGGCCATACCCGACTTCTGCGACCTGCCCCACCCGTGTGGCTCTTAC GGGTTATGCCGACCCGGTCCCACCTGCTCTTGTCTGGACAACTCAACCGCGTTTGGGTTCCGTCCGGGTCATTCGGGTCAGTGTTTACCCGCGGAAACAG GTGATTTTTGTGGCGGGCAAAGACCCGGCGAACCCGGGTTCCGGGTGTTGAGGAGTAACAAGGTGGATTTGCCGTATAAGGAGCTGATGAGCTACAAAAC GGCGCCGTCGATGAGGGAATGCGAGGGGCTGTGCGAGAATAACTGCACGTGTTGGGGAGCAGTGTACAATAACGCATCCGGGTTCTGTTACCTGGTGGAT TACCCTATCCAGACGGTTTTGGGAGTGGGCGACGAGGGGAAATTAGGGTACTTTAAGGTGAAAAACGAAGCGGCGAAGGGCCGGGATGGAGTTGGGTCGG GTGTGCGGATCGGGTTGGTGTGCGGGGCGGTTTTGGTTTTGGCGGGAGCGGTTGGGGCGGGGAGTTATAAGGGTTGGGAGAAGTACAAGAGGAGAAGGAA TCGGATACTGGAAGAGGATGGAGTGTCGGAGCCCGGCCCGTATAAGGGACTCGGGTCGGATAGTTTTAGATCCGTTGAGATGTCCGATAGAAGATGGCGT AAGGGATGA
AA sequence Show only first row Show all	>Lus10014371 pacid=23143668 polypeptide=Lus10014371 locus=Lus10014371.g ID=Lus10014371.BGIv1.0 annot-version=v1.0 MKPRPIGLTAATRFLSLLLIFISSSSASAAQTELLPGFRAAPDPSTSSFQPILNDPSGNFSLGFLRLDSDHQFALSVVHIPSLQPIWQPNPTRSDQTTTQ TQLSFNGTLVISDSRSRILWSTATGSNTAGDRVVLLNNSNLQVLRNDAVVLWQSFDSPANTLVQGQNFTSATSSDGRYALRLGYDFMALYADFSGKGDPD RIYWKHKALEARADVVPGQGPIHARVDPIGFIGMYQSVNGSVPIDVQAFNSFRREVNGFHIVRLEADGNLKAYNWDGSNWVLDYQAIPDFCDLPHPCGSY GLCRPGPTCSCLDNSTAFGFRPGHSGQCLPAETGDFCGGQRPGEPGFRVLRSNKVDLPYKELMSYKTAPSMRECEGLCENNCTCWGAVYNNASGFCYLVD YPIQTVLGVGDEGKLGYFKVKNEAAKGRDGVGSGVRIGLVCGAVLVLAGAVGAGSYKGWEKYKRRRNRILEEDGVSEPGPYKGLGSDSFRSVEMSDRRWR KG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	2.8	0.9575
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	2.8	0.9662
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	3.3	0.9456
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	3.7	0.9512
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	3.9	0.9573
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	4.5	0.9468
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	4.6	0.9398
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	5.3	0.9610
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	7.1	0.9602
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	7.6	0.9337

Compare expression of checked genes

Lus10014371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.