Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27770 186 / 8e-57 Plant protein of unknown function (DUF868) (.1) AT2G36470 177 / 2e-53 Plant protein of unknown function (DUF868) (.1) AT3G04860 114 / 1e-29 Plant protein of unknown function (DUF868) (.1) AT5G28150 110 / 3e-28 Plant protein of unknown function (DUF868) (.1) AT2G04220 95 / 3e-22 Plant protein of unknown function (DUF868) (.1) AT4G12690 94 / 3e-22 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G48270 89 / 4e-20 Plant protein of unknown function (DUF868) (.1) AT3G13229 85 / 7e-19 Plant protein of unknown function (DUF868) (.1) AT5G11000 86 / 1e-18 Plant protein of unknown function (DUF868) (.1) AT2G25200 54 / 7e-08 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023869 [exp] 473 / 1e-169 AT2G27770 196 / 1e-60 Plant protein of unknown function (DUF868) (.1) Lus10009405 [exp] 132 / 5e-36 AT2G27770 234 / 5e-75 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 121 / 2e-32 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 114 / 1e-29 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 99 / 2e-23 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 98 / 3e-23 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 94 / 8e-22 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 91 / 2e-20 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 84 / 4e-18 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116200 [exp] 266 / 2e-88 AT2G27770 249 / 2e-81 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 205 / 2e-64 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 203 / 1e-63 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 130 / 1e-35 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 127 / 1e-34 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 117 / 7e-31 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.004G098000 [exp] 108 / 2e-28 AT2G36470 99 / 3e-25 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 108 / 2e-27 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.006G261300 [exp] 102 / 2e-24 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 97 / 5e-23 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10014372 pacid=23143679 polypeptide=Lus10014372 locus=Lus10014372.g ID=Lus10014372.BGIv1.0 annot-version=v1.0 ATGAGGAGCATCGCCACCTGTTACAGCGAACACGCCATCAAAGTCTCCGATTCCTACTGCTCAGGCCCATCAACCCGACCCACCACCATGCCCCGCAGCC TAATCAAACGTCCAGCCCCGTCTTCCATCACCTCCACCTACAAAATCGCCAAAGGAATCTTCGCCGCCGTCAACTGGTCGGGCGGCCATGGCTTCTCCTT CTCGATAACGGACAACACCCCCCCTCCAAATTCGGATTCTACGTCTTCTTCTTCTTATTTCCGTCGTTTTGGGAAGCTAAAAGGGAGCAAGGAATTCCAA GCCTGCGGGTCGAACATCGAGCTGTTCTGGAACCTCTCGTTGGCATCTTATTACGATTCAGGACCGGAACCGGCCAGCGGGTTCTACATCGTGGTACTGG TCGATTCGCAGCCGGCTCTGTTTCTCGGAGACGTCGACGAGATTGAGGAGGAAGGCGAATTGGAATTCAACGCCGAGATTAAGAGAGCAGAGTTCTCCCC GATTTCTCGGATTGAGAAATTCGGGTCTCAGTCGGGTTCGAGTTACTCGACGCGGGCGCAGTTCAGTAAGGTCGGGGAAGCGCACGACGTAGCGATCAGG TTCGGGTCGGGGGAGGATGGACAGAAAGACCCGGCGGCGGCGACGGCGGAGATGATGTCGGTTTGGATTGACGGGAGGAAGGCTTTCCAGGTGAAGAGGC TGAGGTGGAATTTCAGAGGGAATCAGACGGTGTTCCTGGACGGGATTTTGGTGGATGTGATGTGGGATTTACACGGCTGGTTTGAAACAGGGGATCATGG AAATGGAGGTGTGTTTATGTTCAGGACTAGAAGCGGATTCGACAGCAGGCTTTGGCTAGATGAGAAGAAGACTAAGGATCCTGAGCGGGATGAGTTTTCT CTGCTGATTTGTTTGACGAAGGATCACCGTCGATGA
AA sequence Show only first row Show all	>Lus10014372 pacid=23143679 polypeptide=Lus10014372 locus=Lus10014372.g ID=Lus10014372.BGIv1.0 annot-version=v1.0 MRSIATCYSEHAIKVSDSYCSGPSTRPTTMPRSLIKRPAPSSITSTYKIAKGIFAAVNWSGGHGFSFSITDNTPPPNSDSTSSSSYFRRFGKLKGSKEFQ ACGSNIELFWNLSLASYYDSGPEPASGFYIVVLVDSQPALFLGDVDEIEEEGELEFNAEIKRAEFSPISRIEKFGSQSGSSYSTRAQFSKVGEAHDVAIR FGSGEDGQKDPAAATAEMMSVWIDGRKAFQVKRLRWNFRGNQTVFLDGILVDVMWDLHGWFETGDHGNGGVFMFRTRSGFDSRLWLDEKKTKDPERDEFS LLICLTKDHRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	3.7	0.9392
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	4.5	0.9361
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	5.0	0.9575
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	8.0	0.9469
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10005983 [exp]	8.7	0.9416
AT3G46220			unknown protein		Lus10000152 [exp]	15.1	0.8945
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	15.7	0.9223
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	16.7	0.9451
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019002 [exp]	17.5	0.9139
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	18.5	0.9416

Compare expression of checked genes

Lus10014372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.