Plant FIBer expression Database

Lus10014374 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35040 942 / 0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023871
[exp]
1139 / 0 AT2G35040 976 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Lus10013871
[exp]
1086 / 0 AT2G35040 989 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G114400
[exp]
958 / 0 AT2G35040 992 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Potri.008G128301
[exp]
91 / 4e-22 AT2G35040 84 / 2e-20 AICARFT/IMPCHase bienzyme family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02142 MGS MGS-like domain
CL0109 CDA PF01808 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme
Representative CDS sequence
>Lus10014374 pacid=23143689 polypeptide=Lus10014374 locus=Lus10014374.g ID=Lus10014374.BGIv1.0 annot-version=v1.0
ATGCTTGGCTTGACTCGCGCTCCTCCTTCCGCCGCCACAATTTCTGTCCTTCTTCATCAAGGAAAAACCATCGCCTCCATCATTTCAGCCCCTCAATCGG
CTTCAGTTTGCTTCCTTCAAGTTCCTGCCACATCACCCCAGCGCATTGCGCTGAAAGCCATGAGCGGGTCTCAAGCTGTTCCCGTGTCAAATAACGGCAC
AGAAGCTGTTTCTCCTCCTGATGGAAAACAGGTTTTGATATCTTTATCGGATAAAAAGGACTTGGCTTTTCTTGGTAATGGGCTACAAAGTCTAGGGTAC
ACCATTGTATCTACAGGAGGTACAGCATCTGCTTTGGAAAATGCTGGGGTGGCTGTTACTAAAGTGGAGCAGCTGACTCATTTCCCTGAAATGCTTGATG
GACGTGTGAAAACATTACACCCCAATGTCCATGGTGGTATTCTTGCTAGAAGGGATCAGAAGCATCAGATGGAAGATCTTAATTCCCATGGAATTGGCAC
TTTTGATATTGTAGTGGTAAACTTGTATCCCTTTTATGACAAAGTTACTGCAACTGGAGGAATCAAATTTGAGGATGGAATTGAGAACATCGATATTGGT
GGTCCGACTATGATACGAGCGGCCGCTAAGAATCATAAGGATGTCTTGGTTGTCGTCGACTCAGAAGATTATCCTGCTCTGCTAGAGTTTCTCAAAGGAA
ACCAAGATGATCAACAATTCCGTAGAAAGCTTGCGTGGAAGGCTTTTCAACATGTTGCTTCTTATGATTCAGCAGTTTCTGAGTGGCTCTGGAAGCAAAC
TGACGGAGAAAATAAAACGCCACCAAACTTCACAGTTCCCCTCTCACTTAAGAGCTCTCTGCGCTACGGTGAAAATCCACACCAGAAGGCGGCGTTTTAT
GTTGACAAGAGTATATCAGAGGTTAATGCTGTGGAAATGTCGTACAATAATTATTTAGATGCGGATGCAGCTTGGAATTGTGTTTCAGAGTTTGAGAGCC
GTACGTGTGTTATTGTGAAGCATACAAATCCTTGTGGAGTTGCTTCTCGTGGTGATATCCTGGAGGCATATAGGCTGGCTGTAAAGGCCGATCCAGTCAG
TGCATTTGGTGGTATTGTTGCTTTCAATACAGAAGTTGACGAGGATCTTGCAAAGGAACTCCGGGAGTTTAGGAGCCCTACGGATGGCGAAACGCGAATG
TTCTACGAAATTGTGGTTGCTCCAAAGTATACAGAGAAAGGGCTCGAGATCCTCCGTGGGAAGTCGAAGACATTGAGGATCCTGGAGGCAAGAAAGAACG
AGAAAGGAAAGCTTTCCCTCAGGCAAGTTGGTGGTGGGTGGTTGGCCCAAGAATCAGATGACTTAACCCCACAAGATATCAACTTCAAGACCGTGGCCAA
GAAGTCGGTAGATGAAAGCGCGCTTAGTGATGCAAAGTTCGCATGGCTTTGTGTCAAACATGTCAAGAGCAATGCAATCGTAATAGCAAAGAATAACTGC
ATGCTGGGTATGGGGAGTGGGCAGCCGAGCCGTGTGGAAAGCTTGAGAATCGCGATGCGAAAGGCAGGAGACGATGTGAAAGGGGCTGCATTGGCTAGTG
ATGCCTTCTTCCCGTTTGCATGGAACGATGCGGTAGAAGAAGCGTGCCAGGCTGGGATCGGTGTGATTGCGGAGCCCGGTGGTAGCATCAGAGATCAGGA
TGCCATAGATTGCTGCAACAAGTATGGCGTCTCCTTGTTGTTCACCAACGTCAGACATTTTAGGCACTGA
AA sequence
>Lus10014374 pacid=23143689 polypeptide=Lus10014374 locus=Lus10014374.g ID=Lus10014374.BGIv1.0 annot-version=v1.0
MLGLTRAPPSAATISVLLHQGKTIASIISAPQSASVCFLQVPATSPQRIALKAMSGSQAVPVSNNGTEAVSPPDGKQVLISLSDKKDLAFLGNGLQSLGY
TIVSTGGTASALENAGVAVTKVEQLTHFPEMLDGRVKTLHPNVHGGILARRDQKHQMEDLNSHGIGTFDIVVVNLYPFYDKVTATGGIKFEDGIENIDIG
GPTMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQTDGENKTPPNFTVPLSLKSSLRYGENPHQKAAFY
VDKSISEVNAVEMSYNNYLDADAAWNCVSEFESRTCVIVKHTNPCGVASRGDILEAYRLAVKADPVSAFGGIVAFNTEVDEDLAKELREFRSPTDGETRM
FYEIVVAPKYTEKGLEILRGKSKTLRILEARKNEKGKLSLRQVGGGWLAQESDDLTPQDINFKTVAKKSVDESALSDAKFAWLCVKHVKSNAIVIAKNNC
MLGMGSGQPSRVESLRIAMRKAGDDVKGAALASDAFFPFAWNDAVEEACQAGIGVIAEPGGSIRDQDAIDCCNKYGVSLLFTNVRHFRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35040 AICARFT/IMPCHase bienzyme fami... Lus10014374
[exp]
0 1
AT1G77030 hydrolases, acting on acid anh... Lus10018941
[exp]
8.3 0.9142
AT5G06620 SDG38, ATXR4 SET domain protein 38 (.1) Lus10013535
[exp]
17.1 0.8252
AT1G69070 unknown protein Lus10036815
[exp]
17.3 0.8883
AT3G09720 P-loop containing nucleoside t... Lus10013644
[exp]
21.8 0.8955
AT5G08610 PDE340 PIGMENT DEFECTIVE 340, P-loop ... Lus10012633
[exp]
25.4 0.8863
AT4G32720 ATLA1 La protein 1 (.1.2) Lus10011685
[exp]
27.3 0.8880
AT4G32720 ATLA1 La protein 1 (.1.2) Lus10022135
[exp]
29.6 0.8825
AT5G66860 Ribosomal protein L25/Gln-tRNA... Lus10019634
[exp]
32.2 0.8814
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Lus10022832
[exp]
39.8 0.8824
AT1G06560 NOL1/NOP2/sun family protein (... Lus10020761
[exp]
40.6 0.8719

Lus10014374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.