Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03680 219 / 1e-64 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 190 / 1e-54 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G76880 129 / 6e-32 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 123 / 6e-30 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 119 / 1e-28 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 74 / 8e-14 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 70 / 1e-12 Trihelix Homeodomain-like superfamily protein (.1) AT3G10030 42 / 0.0007 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023872 [exp] 462 / 5e-161 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 296 / 1e-95 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 295 / 8e-95 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 125 / 2e-30 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 122 / 2e-29 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 120 / 1e-28 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10020873 [exp] 117 / 3e-28 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 117 / 4e-28 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10028582 [exp] 96 / 1e-21 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235000 [exp] 236 / 5e-71 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.008G025600 [exp] 231 / 2e-69 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 137 / 2e-34 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 133 / 4e-33 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.005G191900 [exp] 127 / 2e-32 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 124 / 2e-30 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068600 [exp] 123 / 6e-30 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.005G192000 [exp] 121 / 3e-29 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 120 / 6e-29 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 114 / 4e-27 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014375 pacid=23143695 polypeptide=Lus10014375 locus=Lus10014375.g ID=Lus10014375.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAAGAAGACCCCATTCCTCCTCCTCCTCCTCACTTCCCCCTCCGTCACTACTTCCACACCACCGGCATACCCACCACCACCGGCGAGGCTC TCTCTAGTCAATATCATTATTTTCATCCTCCTCCTCCTCCTCCTCCTCCACCTTCCAACTTCCCACTACTAGACACCTTCTCACTTCACCGGAACTTCCT CCTTCATAATAACACTAGTACTAGCTTCCTACCCCCTCCGCCGCCTCACGCCTCCTACGACATGGCCGTGATGCAGTTCTTGCCACCTCAGCATCCAACA GTACAGCCAGATTATACTGCTGCTGCTACTACAGCTACTACTACTACTTCCTTCGCCGGGGAAGAGTTGTTCAGCGGCGGCGGTGACGGCGGGAGCGGAA CGGGGAGATGGCCGAGACAAGAGACGCTTACCCTTCTGGACATCAGATCCAGGCTTGACCCTCAGTTCAAAGACGCCAACCACAAAGGCCCTCTCTGGGA CCAAGTCTCTAGGATAATGTCGGAGGAGCATGGATACCAAAGGAGTGGCAAGAAATGCAGGGAGAAGTTTGAGAATTTGTACAAGTACTACAAGAAGACT AAAGAAGGGAAAGCTGGTAGGCAAGATGGTAAGCATTATAGATACTTTAGGCAACTTGAAGCTCTCTATGGTACTAGTACTACTAACCCAATACCTCATG TTCATTCACCATTACAACAAAACCAAGATTCTTCTTCCCATTTCATTGGAAACAATATGGCCACTACTAGTACTAGCTTCCACCACCATCAATATTTACC AAGTACCACATCAAACCAAGATATGTTCTACTCGAGCCTTAGTCTCTCGGCCAATAACAACTCCTCCTCCGAGGAATTCGAGTCCTCTTCCTCCGAGGAC CATGATGTGAGTGTGAATCACGAGGATTCGAGTGTTAGGAGGAGGAGGAAGAGGAGATGGAAGAGCGTGATAAAGGAGTTCATCGATTCGCAGATGAGGA AGTTGTTCGAGAGGCAAGAGTCGTGGTTCGATAAGCTGACCAAGACGTTGGAGAGGAAAGAGGAGGAGAGGATGGTTAGAGAGGAAGAGTGGAGGAAGGA AGAGTTGGTGAGGATTGAGAGAGAGCACAAGTTTTGGGCAAAGGAAAGAGCTTGGATTAAAGCTAGGGACAACTCATTGATGGAAGCTCTAGGGAAGTTG AGTAGTAGTAGTAATGTGAATAAGGCTTCTTCCTCTTCGGATGTCGGTAACTATGGGTTCCTTGGCGGGGAAGCAATGTATAATCCTCAACCGTTGCGGA ATATTCACAGTGATCATCATCATGGATCGTCTTCGTCGTCGTTGCCAATTGGAGGTTCAAGGTTCTTTATTGGGGAAGGAGGGAGCAATCTGTGGGAGAA TTATGGGTTGAAGCTTAGTAAAGGAGACCATGATGATGATGATGATCAAAATCAGTAG
AA sequence Show only first row Show all	>Lus10014375 pacid=23143695 polypeptide=Lus10014375 locus=Lus10014375.g ID=Lus10014375.BGIv1.0 annot-version=v1.0 MEEEEDPIPPPPPHFPLRHYFHTTGIPTTTGEALSSQYHYFHPPPPPPPPPSNFPLLDTFSLHRNFLLHNNTSTSFLPPPPPHASYDMAVMQFLPPQHPT VQPDYTAAATTATTTTSFAGEELFSGGGDGGSGTGRWPRQETLTLLDIRSRLDPQFKDANHKGPLWDQVSRIMSEEHGYQRSGKKCREKFENLYKYYKKT KEGKAGRQDGKHYRYFRQLEALYGTSTTNPIPHVHSPLQQNQDSSSHFIGNNMATTSTSFHHHQYLPSTTSNQDMFYSSLSLSANNNSSSEEFESSSSED HDVSVNHEDSSVRRRRKRRWKSVIKEFIDSQMRKLFERQESWFDKLTKTLERKEEERMVREEEWRKEELVRIEREHKFWAKERAWIKARDNSLMEALGKL SSSSNVNKASSSSDVGNYGFLGGEAMYNPQPLRNIHSDHHHGSSSSSLPIGGSRFFIGEGGSNLWENYGLKLSKGDHDDDDDQNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10014375 [exp]	0	1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	3.5	0.8219
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	7.9	0.8206
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	9.5	0.7986
AT4G34500			Protein kinase superfamily pro...		Lus10023574 [exp]	11.8	0.8148
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10031657 [exp]	14.5	0.7869
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	15.3	0.7880
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	15.4	0.8184
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10006776 [exp]	17.7	0.8125
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	23.4	0.8080
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	24.8	0.8078

Compare expression of checked genes

Lus10014375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.