Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023874 [exp] 189 / 1e-61 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013700 [exp] 60 / 2e-11 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014377 pacid=23143720 polypeptide=Lus10014377 locus=Lus10014377.g ID=Lus10014377.BGIv1.0 annot-version=v1.0 ATGCCAACATCAACTGGTTTCCCACAGCCAAAAAGACCAGACAACAGCTATTCCCCACGGTTACCAACTGAGACACCTTACCCAGCTCCCCAATTTCTCC CACCACCTGAAACCTCTTCCCCTGTCACGGCCTACCCTGTTCCTTCACATCTCCTCGTGCCCCCGCCGGTCGGCTTTCCGGTTCTGTTTAATAATCGAGA TGGGTATTTGGATGACTCGATTTCTACTACGGAGGAAGAGAGGGAATCGATCGAGGAGCTGAAACGTGGGATATTGGAGCTGTACGAGAAGCTGCCTGCG AGTATAAGGAGCAGGATTAATTTGGACAAGTTTCATATCCCTAATGATGTAGTGACGGGTTTGAAGGTTGATGATGCTCGGAGCAGGGAAGTGCGAGGGA TCGTTGACCAGTTGTCGCCTAAGCTCGAGCGCTTTAAGGTTAGGACTGTACGAGGTGGAGGTGGAGGTGGAGGTGGAGGAGTCGTGACTGTGGATGATGG TGATGATGATGCTGGTGACAAAGCTAGAAATGGAACCCAGTTTTTTTAA
AA sequence Show only first row Show all	>Lus10014377 pacid=23143720 polypeptide=Lus10014377 locus=Lus10014377.g ID=Lus10014377.BGIv1.0 annot-version=v1.0 MPTSTGFPQPKRPDNSYSPRLPTETPYPAPQFLPPPETSSPVTAYPVPSHLLVPPPVGFPVLFNNRDGYLDDSISTTEEERESIEELKRGILELYEKLPA SIRSRINLDKFHIPNDVVTGLKVDDARSREVRGIVDQLSPKLERFKVRTVRGGGGGGGGGVVTVDDGDDDAGDKARNGTQFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014377 [exp]	0	1
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	2.8	0.8812
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	3.7	0.8942
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	7.7	0.8963
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	13.9	0.8776
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	14.5	0.8603
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	17.5	0.8797
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	17.5	0.8897
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031766 [exp]	21.9	0.8307
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	23.0	0.7450
AT2G17990			unknown protein		Lus10028465 [exp]	23.2	0.7884

Compare expression of checked genes

Lus10014377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.