Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03670 203 / 5e-59 unknown protein AT2G36420 77 / 8e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023875 [exp] 609 / 0 AT5G03670 231 / 2e-69 unknown protein Lus10035565 [exp] 250 / 6e-77 AT5G03670 226 / 9e-68 unknown protein Lus10027723 [exp] 199 / 2e-57 AT5G03670 236 / 2e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115300 [exp] 162 / 1e-43 AT5G03670 199 / 4e-57 unknown protein Potri.001G110900 [exp] 42 / 0.0006 AT4G23020 135 / 9e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014378 pacid=23143677 polypeptide=Lus10014378 locus=Lus10014378.g ID=Lus10014378.BGIv1.0 annot-version=v1.0 ATGGCTAATCACCATCACCATCATCAACAGAAGCACTTATACGAACTGTTGAAAGACGACCAGGAGCCGTTCGTCCTCAACAACTACATCGCCGACGTCC ACCGCCGCTGCCACCTCACTCGAACCCAACCCAAACCGCCCAAATCAAACTTGGCCCGAAACGTTTGCTTTCTCTCCTTATCCAATTCCCCCGACCCGCG AAAATCGCCTCTCTACTTCCCAAAATCCCCCGCCGGCGCCCGTGTCCCGTCCAAAACGACGTCGCTTCTCCTCGAAGCTGCAATCAGGGTCTCCCACAAA ACGCAGGGAGGAGGAGGAGGGAATAAGAAGAAGAAGAAGAACAGCGGAAAAATCGGCTCCGGGATTTTCGGATCTCTGCTCAAGCGTCTGGGGAATAGTA AGAAGCCGAAGAAGGAAGAAGTTAACGGCGTTGATGTTAAGGTCTCGGTGAAGGATATTTTGCGGCGGGATTTGAACAGAGGAGGGTCAGGACGGAATAA CAGGAGGGCGGAATCTGATTCTTCACCGTCGAGGACAAACACAGTGAGTAGTGGCGGTCGCGAGAGTGAGCCGAGTAGCGCGGTCTGGTCATCGGAGAGT AACGAGTCGATCGATTTGGATTTGGATTTGGAGTGTCGTTCGTCGAGCAGCGGTGGAGCCGGCTTATCGGACGAGGAGCTTGAGTACGTTACTGACGTCG TCTACCGCGACGATGCGCAGTGTTTCTGTGAGAGCCTTTTCCATTTCGTGCTTGAAAGAAGTACTTCTTCCTCGTCCTACGGTCGTCGGACTCCGGAGTT CTCGTCGCCGGCTGCTTCTCCTGTCCGTCTGAAAACAGAGGGGAATGAGGATAACAACGATGTGGAAAGCTTGAATAAGTGCCAAGTAGTACAGAAACAA GGAGAGGAAGAAGAGAAGGAGCAGTGCAGCCCTGTTTCAGTACTGGACCCACCATTTGAGGACGACGACGACTGTGATGAAGAAGAAGAAGATGATCATG ATGATGAGGACGAGAGGGAGGACGACGACGAGGGTTTTGATATGGAGTGTAGCTTTGCCTTTGTACAGAAGGCAAAGCAAGAGCTGTTCGAAAAGCTGCG TAGATTCGAGAAGCTAGCAGAGCTCGATCCTGTTGAGCTCGAGAAACGAATGCTCGAGTATGATGACGAAGAATACGATAACAATGATGATGAAGGAGCC AGTGAGTGTGGAACTCCAGATGATAATTGCAACAACTGCACTAACCAATTGGTAATGGACGAACTTAGCAAGTCGAGCATTCAAATCCCTGCAGGAGACG TGAAGAGACTGGTCTCTGACGTCATCGACGAGGAAGAAAAACAAGGGGCAGGCGCGACGAAAAGGGTGTGCAAGAGGTTTGAAGCATGGAATGAAGTGGA GTCCAACACCATTGAGATGATGGTGGAGCATGACTTCAACAACTCACACAGTGAATGGAGACACAAGGGGGGTCAAGTTTCTGATATAGCAATGGAGATT GAACTTGCCATCTTTGACTTGCTGGCTGAAGAACTTATGTGA
AA sequence Show only first row Show all	>Lus10014378 pacid=23143677 polypeptide=Lus10014378 locus=Lus10014378.g ID=Lus10014378.BGIv1.0 annot-version=v1.0 MANHHHHHQQKHLYELLKDDQEPFVLNNYIADVHRRCHLTRTQPKPPKSNLARNVCFLSLSNSPDPRKSPLYFPKSPAGARVPSKTTSLLLEAAIRVSHK TQGGGGGNKKKKKNSGKIGSGIFGSLLKRLGNSKKPKKEEVNGVDVKVSVKDILRRDLNRGGSGRNNRRAESDSSPSRTNTVSSGGRESEPSSAVWSSES NESIDLDLDLECRSSSSGGAGLSDEELEYVTDVVYRDDAQCFCESLFHFVLERSTSSSSYGRRTPEFSSPAASPVRLKTEGNEDNNDVESLNKCQVVQKQ GEEEEKEQCSPVSVLDPPFEDDDDCDEEEEDDHDDEDEREDDDEGFDMECSFAFVQKAKQELFEKLRRFEKLAELDPVELEKRMLEYDDEEYDNNDDEGA SECGTPDDNCNNCTNQLVMDELSKSSIQIPAGDVKRLVSDVIDEEEKQGAGATKRVCKRFEAWNEVESNTIEMMVEHDFNNSHSEWRHKGGQVSDIAMEI ELAIFDLLAEELM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03670			unknown protein		Lus10014378 [exp]	0	1
AT2G28105			unknown protein		Lus10021424 [exp]	2.2	0.8175
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	12.0	0.7611
AT5G18420			unknown protein		Lus10027578 [exp]	12.4	0.7010
AT5G47570			unknown protein		Lus10008504 [exp]	15.3	0.7190
AT5G03670			unknown protein		Lus10023875 [exp]	16.4	0.7289
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	19.6	0.7280
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	19.7	0.7411
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	25.5	0.6733
					Lus10009774 [exp]	28.7	0.6989
AT5G49210			unknown protein		Lus10043148 [exp]	29.7	0.6481

Compare expression of checked genes

Lus10014378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.